Pequ011257.1
Basic Information
- Insect
- Platygaster equestris
- Gene Symbol
- -
- Assembly
- GCA_030522785.1
- Location
- JAPYZK010004145.1:3922-13542[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.035 5.2 8.8 0.3 2 23 569 590 568 590 0.96 2 17 0.021 3.1 9.5 0.4 2 19 597 614 596 617 0.91 3 17 1.3 2e+02 3.8 0.5 3 23 624 644 623 644 0.95 4 17 0.00064 0.095 14.2 1.2 3 23 653 674 652 674 0.97 5 17 0.0036 0.53 11.9 3.5 1 23 681 704 681 704 0.96 6 17 0.0002 0.03 15.8 0.7 1 23 710 733 710 733 0.93 7 17 0.56 82 5.0 0.3 2 23 741 761 741 761 0.92 8 17 3.8e-07 5.6e-05 24.4 2.8 2 23 767 788 766 788 0.97 9 17 1.5e-06 0.00023 22.5 0.2 1 23 794 816 794 816 0.99 10 17 0.00053 0.078 14.5 2.4 2 23 828 850 827 850 0.95 11 17 0.083 12 7.6 0.4 1 23 856 879 856 879 0.94 12 17 0.0046 0.68 11.5 3.4 2 23 897 919 896 919 0.95 13 17 0.0022 0.33 12.5 1.5 2 23 926 948 925 948 0.96 14 17 0.00035 0.052 15.0 0.9 2 23 956 977 955 977 0.93 15 17 0.015 2.3 9.9 3.0 1 23 983 1006 983 1006 0.94 16 17 0.23 35 6.2 3.7 2 23 1013 1034 1012 1034 0.96 17 17 0.00082 0.12 13.9 2.0 1 23 1040 1062 1040 1062 0.98
Sequence Information
- Coding Sequence
- ATGGCCTCGAAAGCACTTGCAACTGAGGACACCGACCTCTCCACCTTTCTCATCTTCAACAACGATGCCCAACGTCGAAAAATTGCCATCGCCGTGAAAACTGGCCAACCGGGTACAAACCAGGTGAAAAACATTagcgaattgaaaaaagtcaCACCCGTCATCAAACTCGTAGGCCAAGAGCCAGCGAAATTCGGGGCTGCCCAAAAAACTCGCGCTCCCTTCGCCCCTGAAATTCGAAGCgagatgagaaaattttgccGTGCTTGCGCCGGCATGAAAGCGCACATGGTCGATATTTTCAGCGAAAAAGGGAAACAAATGCGATTGGGTCAAATGATATCGCACTTGGAGGATATAGACGAAAAAACGAGTTTCAGCACTTTGCTATGCATGGAATGCATTTGCGACTTAAAAAACagttatactttttttttgcaaatcaaGAAAGCTCAGGTGAAGCTGAAGTCGATTCACGGGAAGATGACTTGGGCGGTGGAAAAACCTGTCGAGTCGCAGAGTTTGGATTATttggagGAACCACAAAAGCTCCAAGACCACAGTTATTTCGAGCCactgaaaatggaaattgaaaccGATGGAGAATTGATAACGCCAAAATCCGAGGACACTGAATCCATCGAAGAATTCGACCCCGAGGATCCTTCATTTTTGCTAGAATCCgaggaagaagaagaagaggaaaaaattgaaatatgggAAGAGtcaataaaattagaaaagcCGTCTCCAACGAAATGTGGCAGAAGGCCCAAAATTCTGGGCAGTGAAAATAGATCGATGGGCCTGAAATCTTATTCGACTGTAAAATCCACTGCCGAATATGTGCCGCCGATGACGAGCAACGAAACAGtgttggaaaatgttggatCCGTCAAGGAAGAAATGACtaaagaaaattccgaaaaagcaGAAAAAGTAGCTGCAAATGTTGTGAGTCCTGGGGAAAAAGACGAAGGAATCATGTACGTCACTGTGAAAGGATCGAAACCAAACGAATTGCTTCTGGTGAAGGTTAAAAAAATGGACAAAGCAGCGGAGAAAAAACCCGCCCCACATCTCGACTTTACGAAGACCCCCATGAATATAAAAGCCATAAAACCCATAGAAAAGTTTCTCTCTCGGTACGACTCCCTCGTTAAAGACAAAAGCCTGTTCCCATCGAAAGTTCCGGGCGAACGCGAGCAACAAATCGAGGAGGAAATCGAAGAATACAAAAAACGTCGGGAAAAAATTCTCGGTAGAACAAACCCCATAGACTATTTTTCGAGCTCATCTTTTCCAACGCCCAAAAGCAACGACATCGAAATAAAGCTGGAAatggaatttcacgaaaatcctTATTTTGCAAGCAACATTAAACAAAACATAACTTACGAAGAAAAACCCAACAATTATTCCATCATTTCGAACGACAACAGTCGGGAACTTTTTATGCAAGTCCGTTACAACGACAAAACTTGGAAAGAGGAAGTAAAAGTTAAAGTCGATGACGAAAATGATCGCGTTCGGATAATGCAAGCTCTGAATGATAGTGACTGTGAAAAGAATTTAAATGCTTTTTTAGGCTATCTTAAGTTGCGACGAATCATTGTGTCGCGACTCAAGGATGAAGATATTGTTGCGCTTTATGACGCTAAGTATAGAAAAGACGAGGTTTGCTTCggggagaaaaattttttggagtgcGATTTTTGTTTGGAGACTTTCGTGTTGAGGGACAAGTTGAGGGAACATGAGAAAGTTCATGATTTCAAGATGATGTTGTACTGTGATGATTGCGGGGAGGAATTTTCGACGAATAAGATGAAGAGGAATCATAACTACAGTTGCAGCATGAAGCGTATCTGCAGATACTGCGGGGAAAGCCTGGAAACGGTGGGTaagaaacgtcagcacgagcaAAAGCACTGCGACAACGAGCACGGCCAGCTCTGTGACATGTGCGGCGAGAAATTCAAGCACCAGGGCACCCTGGACCAGCACGTTAAGGTTCGTCACATGGACctggagaaaattttccagtgcCACATATGCCCCAAGAAGTTCTCCCTCAAGACGAAACTCAGCTTCCACATAAAGTCCGTGCACACGGACGAGAGGGCGTACCTCTGCGAGGACTGCGGGGCGGATTTCAAAAACCCGGCGAGTCTTCGACACCACCGAGTGCGGAAACACCAGCCCGCGGGCAGCGAGCGCCAGTGCAGCGTCTGCGACAAGATGGTCGCGTCTTACAGTTTTTCGAAGCACGTGCTGTCGCACAGGGATTTGTGCATCAAGTGCCCGCATTGCGAGAAGAGCTTCAAGAATACTTCGACATTGAAACAGCACATTCGGATTCACGAGGATCGGAGGCAGTATCAGTGCGACACTTGTGGGGTTGGCTTCAACAGGAGGGACGGCCTTCGCTTGCACATGAGGGTTCACGAGAAGACGGACGGTCGCGGACTCAAGGAGTGCTCCTGCCAGGTATGCGGGGAAAAATTCCCGAACCACTCGACCCTGGTAATCCACAGGAACAGGGTGCACAAGGGCGGTCGGAAATTCACCTGCAGGATCTGCAACAGGTCCATGATCTCCGCGGCCTCTCTGAGCCTTCACCTGGAGCACATCCACAAGGAGAGCGAGAGCGCGGAGGCTGCAGCCGATGGGGGAGACCGTAAGATCACTTGTTGCCAGTGCGGGAAGACGTTCAAGACGGAAATGATCCTAAGGACGCATATGAAGAACACGCACACGGAAAAGCAGCCGACGAAATGCAAGGACTGCGATGTGTACTTCACGTCCGACGTCAGGCTCAAGCATCACATGATGGTGGAGCACAACAGACTGGAGGGGACTTTGCAGTGCCCGCATTGCCCCAAACGATTTGTCAATCAGTTGAGGCTGAAAACGCATCTGGTTGCGCATTCCGAGGAACGTCCTCACAGTTGCGAGCTCTGCGGCTTCCGGCTGAAAACGAAAATCCAGCTGATCAAGCACAAGCAAAACAAGCACAGCAACGCGCGCCCCCTGCAGTGCCGGTACTGCGATTGGCGCTGCAAGCAGGTGAGCGCCCTCGTTTGCCACGAGCGCACCCACACGAACGAACGCCCCTACGCTTGCGACGTGTGCAAGCAGCGCTTCAAGTACCTCGGCGACAAGAACAAACACCAGCGCCGGCACGTCTCCATGGGCGGCGAAGGCTTCAAAAGGACCATCGCCGCCGCCAGGAGCATCGGCTTCGAGAAGCCGAAAAtcgaggaggaggaggaggacgACGACTCTGAACACGATGACGACGTGGCTTCCGTGCTGGGCAGTGCGATCCTCGAGAGCGAGGGGGAAATTAACGCCGAGGAAGCCAAGTTCGTGGATACGGGCAACTCGCATCTCATCAAGTTCGAAGCCCAGGAAATTGTTGACGAGAACGGCCAGACATACCGGACGACGTATTTGAAACAGGACtttgacgaaaattcagaggaaCCTTCGGAACCCCACCAAGTAATAATGAACATCGACCCCGATGGCCACATTTACACGGAAAAAGTGACGGTGGACGCCATAGAAATAGCCCCGTCGTCCCCGGAAATGATCACGAGCGATCTTCTGCGATCGCAAACTGTTTTTCACATGCAGCCAGTCTACGAGAACGGCGAGTACAGAGATATCCCGGTCAttatgttgcaaaatttgtccGAGGCCGGTTCGGAAGTTGATCTTTCCGCTGCCTCGATTAcgctataa
- Protein Sequence
- MASKALATEDTDLSTFLIFNNDAQRRKIAIAVKTGQPGTNQVKNISELKKVTPVIKLVGQEPAKFGAAQKTRAPFAPEIRSEMRKFCRACAGMKAHMVDIFSEKGKQMRLGQMISHLEDIDEKTSFSTLLCMECICDLKNSYTFFLQIKKAQVKLKSIHGKMTWAVEKPVESQSLDYLEEPQKLQDHSYFEPLKMEIETDGELITPKSEDTESIEEFDPEDPSFLLESEEEEEEEKIEIWEESIKLEKPSPTKCGRRPKILGSENRSMGLKSYSTVKSTAEYVPPMTSNETVLENVGSVKEEMTKENSEKAEKVAANVVSPGEKDEGIMYVTVKGSKPNELLLVKVKKMDKAAEKKPAPHLDFTKTPMNIKAIKPIEKFLSRYDSLVKDKSLFPSKVPGEREQQIEEEIEEYKKRREKILGRTNPIDYFSSSSFPTPKSNDIEIKLEMEFHENPYFASNIKQNITYEEKPNNYSIISNDNSRELFMQVRYNDKTWKEEVKVKVDDENDRVRIMQALNDSDCEKNLNAFLGYLKLRRIIVSRLKDEDIVALYDAKYRKDEVCFGEKNFLECDFCLETFVLRDKLREHEKVHDFKMMLYCDDCGEEFSTNKMKRNHNYSCSMKRICRYCGESLETVGKKRQHEQKHCDNEHGQLCDMCGEKFKHQGTLDQHVKVRHMDLEKIFQCHICPKKFSLKTKLSFHIKSVHTDERAYLCEDCGADFKNPASLRHHRVRKHQPAGSERQCSVCDKMVASYSFSKHVLSHRDLCIKCPHCEKSFKNTSTLKQHIRIHEDRRQYQCDTCGVGFNRRDGLRLHMRVHEKTDGRGLKECSCQVCGEKFPNHSTLVIHRNRVHKGGRKFTCRICNRSMISAASLSLHLEHIHKESESAEAAADGGDRKITCCQCGKTFKTEMILRTHMKNTHTEKQPTKCKDCDVYFTSDVRLKHHMMVEHNRLEGTLQCPHCPKRFVNQLRLKTHLVAHSEERPHSCELCGFRLKTKIQLIKHKQNKHSNARPLQCRYCDWRCKQVSALVCHERTHTNERPYACDVCKQRFKYLGDKNKHQRRHVSMGGEGFKRTIAAARSIGFEKPKIEEEEEDDDSEHDDDVASVLGSAILESEGEINAEEAKFVDTGNSHLIKFEAQEIVDENGQTYRTTYLKQDFDENSEEPSEPHQVIMNIDPDGHIYTEKVTVDAIEIAPSSPEMITSDLLRSQTVFHMQPVYENGEYRDIPVIMLQNLSEAGSEVDLSAASITL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -