Pequ006244.1
Basic Information
- Insect
- Platygaster equestris
- Gene Symbol
- arx
- Assembly
- GCA_030522785.1
- Location
- JAPYZK010001618.1:1-4434[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.2e-05 0.0048 18.3 2.3 1 23 159 181 159 181 0.98 2 12 3e-06 0.00044 21.6 0.5 1 23 188 211 188 211 0.97 3 12 0.00081 0.12 13.9 7.2 1 23 217 239 217 239 0.98 4 12 0.00051 0.076 14.5 0.2 1 20 251 270 251 273 0.93 5 12 0.00012 0.017 16.5 0.4 3 23 281 303 279 303 0.92 6 12 0.00027 0.04 15.4 7.0 1 23 309 331 309 331 0.96 7 12 3.2e-07 4.7e-05 24.6 0.1 1 23 337 359 337 359 0.94 8 12 1.2e-05 0.0018 19.6 0.6 1 23 365 387 365 387 0.98 9 12 0.0025 0.36 12.4 0.2 5 23 398 416 395 416 0.91 10 12 0.00033 0.048 15.2 0.5 3 20 424 441 423 443 0.94 11 12 0.59 87 4.9 2.7 3 23 453 473 451 473 0.95 12 12 0.002 0.3 12.6 0.3 2 22 480 500 479 500 0.93
Sequence Information
- Coding Sequence
- atgtcAGTGTCTACTGACGTGGCCGACGATGGCTTGACAGAAAATGACTTGGTTGATACGAAAAACAAACCCAAAAGAACTCGTCAGTTCTTCACCACAGAGCAAGTTCAGGAACTTGAAAGGCTCTTTGAGAAAAACCCGTATCCTGACCCACCCACAAGGGAAGACCTAGGGAAAAGAATCGATGTTACTTCAACAAGAATCCTGGGATGGTTCCATTCCCGTCgtgcaaaatacaaaaaagagaaaaaacatCCGATCCTAGTATACAAAGCTCCAAAAAGACGAAAGTCGGATCCTGTGCCAATTGACCAAATCGGTGTTCCTAGTACGGAAAACCAACATCAAACAGATCCACCGACATTCTTCCAATGCACCATTTGCGATTCTCATTTTTGGTGTAAGCGACGTTTTCACTTTCATATGAAAACTCATCCCGCGGCTGAATATCACCAAGAAATCGAACAAAAATTGTACCAATGTGCTCATTGCGAGAAGGGATTCGATAGGAAATACTCGTTGGTTATGCATTTGTTCACGCATAATTTATACAAAAAGAAGTATTCTTGTTCCCAGTGCAACAAGGCCTTTGCTTACAAGTGGTATCTGAATAATCACATCAAAGTAGTGCATACAAAGGGGAAAATACATCAATGCAAATTTTGCGACAAGAAATTTACCCATGGCTTGAGTCTCCGTTCGCACCTTCGGAGACACGAACTTCCTAAGGGAGCGGAGTTACAGGACAAATATTTCTGTCCTATTTGCCAAAAACCCTACAAGTCCATCAGTGGCTTGAAAACTCACGTGCCGGTGCATTCAAAAGAACGAAATGTCGTGTGCACTGTGCCAGGTTGTGGAGCCAAGTTCCATCGTAAGGAATATCTCAATCGACACATGATTTATCATGACGGGACAAGAAAGTATTTGTGTAATGTCTGTGGAAAACGTTTCCATACGACTTGCCATCTCAATGAGCACATGCTGACGCACTTCAGCCAGAAGAATTATAAATGCAATGTTTGTGGAAAATCTTTTACTCAGCCTGGTGCTCTCCGCAACCACGGTGTAGTACACATCCAAGAAAGGCCTTACAAATGCAGCATTTGCGGAAAAGCATTCAGGCTCAAAAAACAAGTTGCACGGCATGAAATAAGGCACaacgaaaccgaaaaaaaagtagaatGTATAGTATGCggtaaaaaatttcgcgatataTATCTCCTGAAACAGCACAGTTTGGTGCACTCGGACCAACTTTCATTTTGGTGCGTGAATTGTGATAAATATTTCCGCTACaaatcgaatttcaagaaGCATGTTCTTGCTTGTGGAGCCAAAGAAGATAATCTCTTTTGCTCAGCATGCAGTCACTACTACACGGATCCAAATGCTTACTTTGAACACATGTGTTCTCACAACAAAAAGTCTGATTCGAGTTGCTCCAAATGTGGTCAGACGTTTGAAGATTTCACGTTGTTGAGCCAACATGTTATGACCTGCGATTCTAAAAAAGATATTCAGCTGGATACATCAGAGGGCCAAAATGAAACTCAGCCTGAAGATGCTAAACATTGTTTCAATGACACACTGGAAGAAAAAGTTAATCTTCCtcacaaaatgtcaaaaacggTCATCGTCAAacgcgaaaaaaacaaaaaagccggcaagaaaaatgttttcggaGAAGATGAAAGTGTTTCTGAAGAGAGTGATTTTGAAGAGCAAAAAGAAAGTGCAGAAGAATCCGAAAATg
- Protein Sequence
- MSVSTDVADDGLTENDLVDTKNKPKRTRQFFTTEQVQELERLFEKNPYPDPPTREDLGKRIDVTSTRILGWFHSRRAKYKKEKKHPILVYKAPKRRKSDPVPIDQIGVPSTENQHQTDPPTFFQCTICDSHFWCKRRFHFHMKTHPAAEYHQEIEQKLYQCAHCEKGFDRKYSLVMHLFTHNLYKKKYSCSQCNKAFAYKWYLNNHIKVVHTKGKIHQCKFCDKKFTHGLSLRSHLRRHELPKGAELQDKYFCPICQKPYKSISGLKTHVPVHSKERNVVCTVPGCGAKFHRKEYLNRHMIYHDGTRKYLCNVCGKRFHTTCHLNEHMLTHFSQKNYKCNVCGKSFTQPGALRNHGVVHIQERPYKCSICGKAFRLKKQVARHEIRHNETEKKVECIVCGKKFRDIYLLKQHSLVHSDQLSFWCVNCDKYFRYKSNFKKHVLACGAKEDNLFCSACSHYYTDPNAYFEHMCSHNKKSDSSCSKCGQTFEDFTLLSQHVMTCDSKKDIQLDTSEGQNETQPEDAKHCFNDTLEEKVNLPHKMSKTVIVKREKNKKAGKKNVFGEDESVSEESDFEEQKESAEESEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01213187;
- 90% Identity
- iTF_01213187;
- 80% Identity
- iTF_01213187;