Pequ002487.1
Basic Information
- Insect
- Platygaster equestris
- Gene Symbol
- -
- Assembly
- GCA_030522785.1
- Location
- JAPYZK010000424.1:16784-21071[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00028 0.041 15.4 0.2 2 21 93 112 93 113 0.94 2 10 4.1e-05 0.006 18.0 1.9 1 23 128 150 128 150 0.98 3 10 4.5e-08 6.7e-06 27.3 1.1 2 23 196 217 196 217 0.98 4 10 1.5e-06 0.00022 22.5 1.3 1 23 222 245 222 245 0.96 5 10 5.8e-06 0.00086 20.7 0.5 1 23 279 301 279 301 0.98 6 10 1.4e-06 0.00021 22.6 0.4 1 23 311 333 311 333 0.96 7 10 5e-06 0.00074 20.9 0.6 1 23 339 362 339 362 0.98 8 10 3.2e-05 0.0048 18.3 0.2 1 23 368 390 368 390 0.96 9 10 0.00013 0.019 16.4 4.8 1 23 396 418 396 418 0.97 10 10 1.8e-05 0.0027 19.1 0.1 1 21 424 444 424 445 0.94
Sequence Information
- Coding Sequence
- ATGCCGGTGGACGCCGTCAGCGGGATTCCAGGTAGCGTCAGCAAATCCTCTCAAACATCGGACTATGAACCCAACCTGTCCGAAAACTCAATGGACAATGACTTCAGCAACGACAACGATTTCACAACCGAAGACGtcaaaatccatgaaaacCAAACCCCGaccgaaaaaaccaaaacctCTTTAACCCCAGAAGATGAAACAACAAAATTCCTAGAACAAACAATGTTGGAAGAGAGCGAAGACGAGAAACCACTCATATTCAGAACGcgagaaaaatgttggaaatgttcaaaaatatttatcagCCAAACGTCGCTAGAAAAACACTTGTTGGTATGCCAAAAAAAAGTCGAGacgaaaggaaaaaaaattggcaaattcGAGTGCGAAGTTTGCACGAAGGAATTCAAGtaccaaaaatcatttttgaccCACCTGAAAATCCATGCAAACGATTCCAACGAGAACGACAAAAAAGCGTGTTGTATAGAAACGGAACCGGATGTACCGGAACCAGATAGAGCGTCAAGTCCGGAAAAGTCGGATTCCGACGATGAGGAGTTTTTCCTCAGCGAAAGCGAGCAATGTAAAATTTGCGGGAAAGTTTTTGCGACTAAGAGGAATTTAAAGAGGCACTTAGTGACGCACAGCGGACTTAAATACACTTGTAAAGTatgtgataaaaatttttcccggcCAGACAAATTGAAAGAGCACGAACAGTCGAAGCATAGGGACGACTTTTTTGAGAACGATGACTCGGATGAATGTTTGGGCGGGGAAAACAAAGGCAGTTCGGATGGGAAAAAGAGGgAAAAAGGTTTAAGGCCTTACAAATGCAGCCTTTGTTCGAAAGCTTTCGCCCAAGAACAATCTCTGACAAATCATATAGAGCGCCACAATCGAGCAAAAGACAACCAAAAACGCTACCTTTGCGAAATTTGTAGTAAATGCTTCGCTCAAAGTGGTTCATTAGCTGCCCATTTGCGTGTTCATACagGTGTCCGCCCTTACGTCTGCAATATATGTAGCCGTGCTTTTACAAAAAGTACCTATCTCCAGCTTCACGTACGCAGTATTCACAGTAAAGAAAAACCATACATTTGCCAATATTGTTCGCGCCCTTTCGCAAGGGCGAACACTTTGGCCCGGCATATTACTGGTCACACTGGGGAGGCCAAATACCATTGCAAGATTTGCACCAAATCTTTCAGGAGGCTGACTTCGCTCAACGAACATTCTTACACGCACACAGGCGAAAGgCCTTACGCCTGCAAAATCTGCGGCAAGAGATACAACAACGCCGGAAGTTTGTGGGCCCACACGAAAAAATGCAAAGCCCAACTACTGTTGCAACAAGAACCCCTGGATGATCCAGTCGTTGAAAACAATCAGCAGAGCGAAGAAAGTCTGAATTACGCCCAGAAAAAAGAGATCCCGGAAGCAACTACCATCGCGCAGTCTTTTCCTCAATTCTTAATGGCGCAAGCTCACAAATCTGCGCCGAGCAACGCGCAAACCTTTGTTTCCGAGGACCCGAACTCGTACGCCATCAACTCTAAACAATCAAGCAAAACCGCGTACTACACGATTTATCCTAACATGTAA
- Protein Sequence
- MPVDAVSGIPGSVSKSSQTSDYEPNLSENSMDNDFSNDNDFTTEDVKIHENQTPTEKTKTSLTPEDETTKFLEQTMLEESEDEKPLIFRTREKCWKCSKIFISQTSLEKHLLVCQKKVETKGKKIGKFECEVCTKEFKYQKSFLTHLKIHANDSNENDKKACCIETEPDVPEPDRASSPEKSDSDDEEFFLSESEQCKICGKVFATKRNLKRHLVTHSGLKYTCKVCDKNFSRPDKLKEHEQSKHRDDFFENDDSDECLGGENKGSSDGKKREKGLRPYKCSLCSKAFAQEQSLTNHIERHNRAKDNQKRYLCEICSKCFAQSGSLAAHLRVHTGVRPYVCNICSRAFTKSTYLQLHVRSIHSKEKPYICQYCSRPFARANTLARHITGHTGEAKYHCKICTKSFRRLTSLNEHSYTHTGERPYACKICGKRYNNAGSLWAHTKKCKAQLLLQQEPLDDPVVENNQQSEESLNYAQKKEIPEATTIAQSFPQFLMAQAHKSAPSNAQTFVSEDPNSYAINSKQSSKTAYYTIYPNM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01214232;
- 90% Identity
- -
- 80% Identity
- -