Pequ000203.1
Basic Information
- Insect
- Platygaster equestris
- Gene Symbol
- -
- Assembly
- GCA_030522785.1
- Location
- JAPYZK010000018.1:47522-53855[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.8e-06 0.00027 22.2 0.7 1 23 135 157 135 157 0.98 2 18 0.0012 0.18 13.3 1.8 1 23 180 203 180 203 0.96 3 18 0.00017 0.025 16.1 0.3 2 23 210 232 209 232 0.96 4 18 6.5e-05 0.0096 17.4 0.2 1 21 250 270 250 271 0.96 5 18 0.0021 0.32 12.6 0.2 3 23 369 389 368 389 0.95 6 18 7.6e-05 0.011 17.1 0.2 1 23 395 418 395 418 0.97 7 18 5.9e-05 0.0088 17.5 0.1 1 23 489 512 489 512 0.96 8 18 0.0019 0.28 12.7 0.6 3 23 520 541 518 541 0.95 9 18 0.066 9.8 7.9 1.4 1 23 554 576 554 576 0.97 10 18 5.6e-06 0.00083 20.7 1.5 3 23 619 640 618 640 0.97 11 18 4.7 6.9e+02 2.1 0.2 1 23 674 697 674 697 0.73 12 18 0.008 1.2 10.8 1.2 2 23 704 727 704 727 0.93 13 18 1.6 2.3e+02 3.6 0.0 2 23 736 758 736 758 0.84 14 18 0.013 1.9 10.1 0.2 2 23 765 787 764 787 0.93 15 18 4.3e-06 0.00064 21.0 0.7 1 23 795 817 795 817 0.98 16 18 0.038 5.7 8.6 1.2 1 23 855 879 855 879 0.97 17 18 0.0001 0.016 16.7 3.3 1 23 882 905 882 905 0.97 18 18 0.0011 0.17 13.5 0.8 2 23 912 934 911 934 0.95
Sequence Information
- Coding Sequence
- ATGCTCGAACGGTGCTTGCCACCGGATAACGAGaacaaaaATGGATTCTTCCAAACGGACATGCTCAAGGACAAAGAAAACATGCCGATTCTTATTCCAGAAGCCCCCATAGTCAATCCAAATGCGGCCCTGGGCACACCGCCCAGGCTAAGTTCTGACGGGGAAGCGGATCaagaaatcgaagaaataGCAAATCAAAGTGGATCCGATGAAgGTGGCGACGACGTGGACGATCGCAAGTCGGACGAGTACGAGATGGACATGGAGACGAATCCGAGCGATTTCCTGGAGATGACGTCGATGGTGGCAGAGGATTGCGCGGACGAGAGTCAGTTGGCGAATTCCCAGGAAGTCGTAGCCGGCGAGGCGGCCTTCGAGCACAAGAACGAGCAGCACGAAGTCTACGTTTGCTCCTTATGCGACAAAGCCTTCAGCTCGAAAGGTCACCTGTCGTTGCACGCGCGCATACACGTCGGCGCGGGTGACGTCATAGGCGAGAAGGTTATCACCAATGATCACACCTCGTACAAAAGGCCCTACCAATGCGATCTCTGCAACAAATCCTACTCCACTGCCAAACATCGATGGGGACATGTTTCCACGTCGCATCgTGGAAACCCAGCGGTGACGTGCGGCTATTGCAGTCGAATTTACTCGACGCGCATCAATCTCGAGGAACATATAAAGTCGCGACACGCGGGTTTGCCGCCACCTCCGCCATCCCAAGAAATACCCGTGGAAAATAAGTATCAATGCAAAACATGTCCGAAGATGTACACGAACGTAACGGATTTGAACCGGCACGCGCGTGCATGTTTgacggagaaaaaaaaagaagcgaGCAAAGTCGAAAAAGCGAAAAAGGACAAGGCTCTTTTGATGGACGACTCGGAGTCGTCGAGTCACGACACGGACGAAGATTTTCAGGGCTACAAAAACGCCGAGGCGAAACTCGCGAAAAATCCCCAGCTCACGATACTCAAGCAAGCGCTCACCAAAGGTTCCGAATCCCTCAAACGAGATTTGGAGGAACGACAAAAAGTTACGAACAAAATAAGGAAATCGTCGTCGACAAACGATGCCGAAAGTCACAAACGTTGGCTCTGCGAAATTTGTCCCCAAAGTTTCACGTCCGTGGAAAGTTTAAAAGAGCACGAAACTCAGCACGATGCCGAAAAACCGTACATTTGTGTGATTTGCGAAAAAGACTTCGTGTTGAAATCCTCGCTGAGCAGACACATCCAATCGTCGCACAACATGGATGCAGCCCCTTACGTCGACAGCGACAGATGTTtaaagaaagttttgaacCAGCAACTTTGGCACCAGCAAGTCGTGAAACAGGAAATCAAAGAGGAAGTTGTCAACGATCATTCCATTTCCCCTGAATCTTCTGAGggcAATATTGAAAACGAGGAAGAACGCGAAAGCAATCACGACACCATGATCGAGATCGAAACAGTTTTCGTGTGCGAAATTTGCACCCGGGACTTTAATGACCGGGCTTCCTTATGGCTGCATATTCGCGCGACTCACAAAGAATGCGCTGCTCTTGCTTGTGGCATTTGcctgaaaatttgcgaaaacaaCAGTCAGCTACAAAACCATGTAAATATGTATCACGGAGGATCGAAACTCCAAATGTCTGAACAACGAAGGTACAGCTGTTCCATTTGTGGCAGACAACACGATTcgaggaaaaaattgataacccACGTATCGATCCATAACCTCGATCCCAGTTACGACCCAGCGGCGTTTGTACAACTTAACAGCAATTTTTACAACGACAATTTGAACGACATCAGTGAACAATTGCCCGAGGTCGAGGCAGAGGAGGGGGAAAAGAATGATTGTAACATGTGCACCAAGTCATTCCCCACAGAGGATCATCTCATTCGACACCAGAGAAACGCTCACAAGCCTGAAGGCGTGGTTGCAAACGGAGACCCAGGAAATCCAAGCGCAAACAGTCCAAATGTCGTGGGGAACGTAAATAGAGCGCAGTACCATTTGTTTTtcgtttgtgaaatttgtggaagttCGCATCCGAGCAAATGGGACAGGTGGTTGCACGTTAGCAGAGACCACAGTGACGAGCCCTCAAATAGATGCGAACGCGAAGACTGCGGAAAAATCTTCGCCACGAAATCATTGCGCAACGAACACGCTCAGCATCACATGGTCCAAGGCAGTTCACCGAACACCTGCGAAATTTGCGGAAAATTGTGGGGCAGTCGCGTGGACTACTGGAAACACGTGATGGGCGTGCACTCGGACACGGTGCCCTTGATTTGCGGCGTATGTCTCAAGGTATTCCCCAGCGTTCACCAGCTCAGCGCCCATGTCAAGGCCAAACATTGGCCCTTGACCAACGGCGACTTCAGCTGCGACATCTGCGGCCGACCCTACTCGAATAAATCCAAAATGGCGAggcatcgaaaaattcacggcCTCGACGTCGATTTCAACAGCTCTGTAGTAACCAGCAACGACACCACTGCCAATGAAGTTTCTGTCAAGATCGAACCCAACGTTCTGCACGTGCCCGAAAGCGTCGACTTCACTTGTGATATGTGCAACGACGTCAAGTTCGCGAATCTGGACGAATTGAGCCATCACAGGAAAAAGGCGCACAGTTTGTTTCCCTGCGATCTGTGTAACAAATGCTATGGCAGAACGTCGCATTTGTGGAAACACGTGAATCGCGTGCACAAAGGTCATAAAGACGTAACCTGCAGATTTTGTAATAAAACGAGCGCTTCGAGGGATCACCTGGCCGCGCACATCGCGAAATTGCACAGGTGGGAAAACTGA
- Protein Sequence
- MLERCLPPDNENKNGFFQTDMLKDKENMPILIPEAPIVNPNAALGTPPRLSSDGEADQEIEEIANQSGSDEGGDDVDDRKSDEYEMDMETNPSDFLEMTSMVAEDCADESQLANSQEVVAGEAAFEHKNEQHEVYVCSLCDKAFSSKGHLSLHARIHVGAGDVIGEKVITNDHTSYKRPYQCDLCNKSYSTAKHRWGHVSTSHRGNPAVTCGYCSRIYSTRINLEEHIKSRHAGLPPPPPSQEIPVENKYQCKTCPKMYTNVTDLNRHARACLTEKKKEASKVEKAKKDKALLMDDSESSSHDTDEDFQGYKNAEAKLAKNPQLTILKQALTKGSESLKRDLEERQKVTNKIRKSSSTNDAESHKRWLCEICPQSFTSVESLKEHETQHDAEKPYICVICEKDFVLKSSLSRHIQSSHNMDAAPYVDSDRCLKKVLNQQLWHQQVVKQEIKEEVVNDHSISPESSEGNIENEEERESNHDTMIEIETVFVCEICTRDFNDRASLWLHIRATHKECAALACGICLKICENNSQLQNHVNMYHGGSKLQMSEQRRYSCSICGRQHDSRKKLITHVSIHNLDPSYDPAAFVQLNSNFYNDNLNDISEQLPEVEAEEGEKNDCNMCTKSFPTEDHLIRHQRNAHKPEGVVANGDPGNPSANSPNVVGNVNRAQYHLFFVCEICGSSHPSKWDRWLHVSRDHSDEPSNRCEREDCGKIFATKSLRNEHAQHHMVQGSSPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPSVHQLSAHVKAKHWPLTNGDFSCDICGRPYSNKSKMARHRKIHGLDVDFNSSVVTSNDTTANEVSVKIEPNVLHVPESVDFTCDMCNDVKFANLDELSHHRKKAHSLFPCDLCNKCYGRTSHLWKHVNRVHKGHKDVTCRFCNKTSASRDHLAAHIAKLHRWEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -