Pequ013149.1
Basic Information
- Insect
- Platygaster equestris
- Gene Symbol
- -
- Assembly
- GCA_030522785.1
- Location
- JAPYZK010005404.1:7196-12151[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0002 0.029 15.8 0.4 1 23 80 102 80 102 0.98 2 18 0.0031 0.47 12.1 1.1 2 23 132 153 131 153 0.97 3 18 0.00021 0.032 15.7 0.7 1 23 208 230 208 230 0.98 4 18 0.032 4.7 8.9 1.7 1 23 241 263 241 263 0.96 5 18 0.088 13 7.5 0.9 1 23 268 290 268 290 0.94 6 18 0.00038 0.057 14.9 0.4 1 21 296 316 296 320 0.91 7 18 6.2e-06 0.00093 20.6 0.1 3 23 387 407 386 407 0.97 8 18 6.5e-05 0.0096 17.4 3.7 1 23 480 502 480 502 0.97 9 18 0.0074 1.1 10.9 1.8 1 20 507 526 507 528 0.94 10 18 0.3 44 5.8 4.0 2 23 539 560 539 560 0.97 11 18 1e-05 0.0015 19.9 0.7 2 23 599 620 598 620 0.97 12 18 2e-05 0.003 19.0 1.6 1 23 625 647 625 647 0.95 13 18 0.0004 0.059 14.9 3.6 1 23 653 675 653 675 0.98 14 18 3.6e-06 0.00053 21.3 0.4 1 23 691 713 691 713 0.95 15 18 2.9e-07 4.3e-05 24.7 0.7 1 23 719 741 719 741 0.99 16 18 0.00014 0.021 16.3 0.2 1 23 747 769 747 769 0.97 17 18 0.00012 0.017 16.6 4.1 1 23 775 797 775 797 0.96 18 18 0.0082 1.2 10.7 0.4 1 20 803 822 803 824 0.89
Sequence Information
- Coding Sequence
- ATGCAGATCCCGGAATTCTCCCCCATGAACCCTGAAAACCCAGAAGAAGACCTGAAAACCCTCGGAAACTCTGAAGATCTGAAAACCCTGGAAAACTCCGAAGACCTGAAAACCCTAGAAATCCTAGAAAAACCCCAGCAGCACCCCAAAAACCCGGACGAAGAAAGCTACTTCGAAAACCTCAACCTCAGCTCCCGCTTCAAGCCCCAGAACCCCGAAAAGGACGACAAAGTGGTCTTCGTCTGCTACATCTGCGACAAGCAATACCCCCCGAAAACCTTCCTGAAAGAACACATGCAAATACACGAGGAAATCCGCCTGAGCACGGTGGATACCCAGAGAAGCTCGGAAAAATCCCCGGGAAATTCCCGAAGGTCCGGGGTCAAAGCCAACAAGTGCCCCACGTGCGGAAAAGAGTACCTCTACCTGAACTCCTTCCAGAAACACATGAAGCTGCACGAGGAAGAAAAAACGACCGAAGGCATGCCTCTGGAAGTTTCCTTCGAGGAGGACGAAAATTCCCTCCAGTTCGACGACTTCGACCTCATCCATGACTCCGAGAACGAAAAAGAAGACAAAAAGGACAAAAACATCGTCAAGGAGGAAAATTTAGAACCCGAGTTCGTGTGCGTCATGTGCCAGAAAAGTTTCGACACTTTGGAAAAACTCGAAGAGCACCGTTCGAAGCACTCAGGGGAGACAGAAAACGGGAGCAAAAAGTTCAAGTGCCCACATTGTCCCATGAGCTACCTCCGGAAAACGCCGTTTTCCAAGCACGTCGCGTCgcacaaaactttcaagtacGATTGCAAGATCTGCGAACGCGATTTCCCAACGATGGAGGAGCACAAGAGTCATATGGATTTGCACGcgaagacgaaaaattttaaatgtacgGAATGTAAGAAGGTTTTCGGTAACGAATTGACCTTGAGGAACCACTTGATTTTGACGGGTCACAAGACGATTTTGTTTGGCCAGGAGTACGACACTAATAAGAGGATCAAGAGGAACGCCGCGAAGGCGGCGGAGAAGATCATCGACAGGATCAAGACGGAGGATATCGCGGATGAGGAGGAGGAGGGGAAGGAAGGGGAGGGGGAGGAAGACGGTGGAGGGGAACTGAAGGAGGAGAAGGTGAAGAGGAGGATTTCGGATTGCACGGAATGCGACAAGAGGTTCGTGTCGAAGGTGGCACTGGCGAAGCACATGGAGGTGCACGTTAAGGAGGAGAAGGAGAGTGGGGAGGGGGTGAAGAAGGAGGTGGAGGAGAAGGTAGCGGAAGTGAAGGAGGGGGAGGAAAAAGGGACTGAGGAGAAAAAGGAAGAGAAAGAAAGCGAGGAGGAGAAGAGTAGGAAGAGGTCACTTGCTTCGTTAGACGATGATTCCGACGATGACTCCGATTTCGAAGCTAATCCAGATTGGACGATGGACACCCATGAGTGCCCCACGTGCAGAAAACGCTACAGCACGAAAAAATCTTTGCTGCGCCATCAACTTCTTCATGAAGAACCGAATTTTGAGTGCGACATTTGCAGCTCCAAGTTCCATCGAAAGGACAAACTGAAGgcCCACTACGACAAGTGCTCGGAAAAGAACCCGGACCAAGTGCGCCGTTGCAACATCTGCTGCGAGCACTTCGAGAATAATGAACTCCTCCGGGAGCATCGCGCCAAACACGTCACCGAGGGCATCCTCACCGACGAGGACCTCAAGGACATCGAACCCTGCCCGGAGGAAGCGCAACCCGCGGAGAAAGTTCCCCGCAAACGCCGGACCGACATCGTCGGCCTCGAGTGCACCGAGTGCAACAAGCGCTACACTTCCCGGAAGGGCCTGCTGCGCCACATCCAGGTGCACGAGGGCAAACGCTACCTCTGCGACATTTGCCCGAAGAAGTTTTACCGCCGCGAACACCTGAAGATACACGTGGCGAAGCACAATATGGTGAAGCCGTACAAGTGCACCAGGTGCACGAAGAGATTCATGAAGGAAGACCAGCTGACGACACATCTCTCGAAACACGAACGAACCGGGAAAAGGGGCCGCGACACGGACACGCCGAAGAGGTTCCTTTGCGAGATCTGCTCCAAGAGCTTCACCCAGAGCACCACCCTGATCGCGCATTTGAGGGCCCACAAGGGGATAAAGCCCTACGTCTGCGACGTCTGCACGAGGCCCTTCACCACCAACGCGTACCTCAAGATGCACATGAGGACGCACACCCAGGAGCGGCCCTACATCTGCCAGTTCTGCTCCAGGGCGTTCGCCAGGGCCGACACCCTCGCCAACCACCTGACCTCGCACACCGGCGAGGCCAAGTACCACTGCAAGTACTGCCCCAAGAACTTCAGGAGACTCAAGTCCCTCAAGGAACACGTCTTCATACACACGGGCCAGAGGCCCTATGCCTGCCCCACCTGCGATCGAAGGTTCAACAACAACGGGAGTCGCTACGCGCACAGCAAAAGGTGCAAACAGAACGCCCTGATGACCCAGAACCGGGTGCCGCAGGGCCCAGCTCAGGCGGAAGTTCAGGTCCAGGTACCGAAGGTTCAGCCCATGAGCGCCCAGGTGAAGCCCGTGAGTGCCCAGGCGAAGCCGCCGGCTATCAAGACCATCACGATTTCCAGGCCCCTCGAGCAGATCGACCAGCCGATAAATCTGCCGCAGGAAATTTTGATGCCCTTGATCCTGCCGTTGACCGTGACCTTGGCGAATGTTGGGGGGGAGGAGGTAATTTTGCCGGAAGGAACCAAGATTTTTACCACGTCGTAA
- Protein Sequence
- MQIPEFSPMNPENPEEDLKTLGNSEDLKTLENSEDLKTLEILEKPQQHPKNPDEESYFENLNLSSRFKPQNPEKDDKVVFVCYICDKQYPPKTFLKEHMQIHEEIRLSTVDTQRSSEKSPGNSRRSGVKANKCPTCGKEYLYLNSFQKHMKLHEEEKTTEGMPLEVSFEEDENSLQFDDFDLIHDSENEKEDKKDKNIVKEENLEPEFVCVMCQKSFDTLEKLEEHRSKHSGETENGSKKFKCPHCPMSYLRKTPFSKHVASHKTFKYDCKICERDFPTMEEHKSHMDLHAKTKNFKCTECKKVFGNELTLRNHLILTGHKTILFGQEYDTNKRIKRNAAKAAEKIIDRIKTEDIADEEEEGKEGEGEEDGGGELKEEKVKRRISDCTECDKRFVSKVALAKHMEVHVKEEKESGEGVKKEVEEKVAEVKEGEEKGTEEKKEEKESEEEKSRKRSLASLDDDSDDDSDFEANPDWTMDTHECPTCRKRYSTKKSLLRHQLLHEEPNFECDICSSKFHRKDKLKAHYDKCSEKNPDQVRRCNICCEHFENNELLREHRAKHVTEGILTDEDLKDIEPCPEEAQPAEKVPRKRRTDIVGLECTECNKRYTSRKGLLRHIQVHEGKRYLCDICPKKFYRREHLKIHVAKHNMVKPYKCTRCTKRFMKEDQLTTHLSKHERTGKRGRDTDTPKRFLCEICSKSFTQSTTLIAHLRAHKGIKPYVCDVCTRPFTTNAYLKMHMRTHTQERPYICQFCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNALMTQNRVPQGPAQAEVQVQVPKVQPMSAQVKPVSAQAKPPAIKTITISRPLEQIDQPINLPQEILMPLILPLTVTLANVGGEEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -