Pequ008416.1
Basic Information
- Insect
- Platygaster equestris
- Gene Symbol
- lola
- Assembly
- GCA_030522785.1
- Location
- JAPYZK010002556.1:7127-9346[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7 1.4e+04 -3.1 0.0 33 44 86 97 86 98 0.82 2 2 7.9e-12 1.6e-08 35.2 0.0 3 40 445 482 443 484 0.94
Sequence Information
- Coding Sequence
- ATGTCGTACCTAGCAGTCAACTGGAATCACCACACGGACAACTTCATAAAAACCGTCGAAGACCTTTATGAGACTGGAGTATTGGCCGATATGGCCATCTCAGTCTCGGACTCCCCATACGGCCCACTTAAGTGCCACAAGATGATCCTCGTCGCAGCATCCCCGTTATTCCGGAAGCTCATCCTCTCCCACGACGACAACGAGAAGCTAATCATGCACCTGCACGAGGTCTCGTACCACGATATCAATCTCCTCTTGCAGTACATGTACAAAGGTCACATGAACGTTTCCCAGAAAGAGCTGAAGGACATCCTGCCGGTCGCGAAAAGCCTCAAAATTCAAGGCATCGGAAGCGACGATTCCGAAGACGTTAAGGAGATGAAAAACATCGAGGTCAGAGCTTTGGGAGCCGAAGAGTATcgccagaacttccaaaacgaTTCTCCCCTCGATCTCTCCCGAAAATACGTGAATGGAACATCATGCAATTGGAACCTCGCTTCCACTTCTTTTCCACCGAGCCAAAATCCGGTGAAAGATTGTCGCGAAAAATcgccaaacccaaaaaaagcGATTATCTTGAAAGTCCAGAGCCCGGAAAAGTCCCAAAACTGGGGCAACGTGATCATCTCAAAGATTGGAACCGAAACTGATCGTCCGGAATCGAGGAATCAAGAAAAAGCCCAGAATTGGGCCGACAAAGCGATTATTTCGAAGATCGAAGCCACCGTTAAGGAAGACCGACCAAAATCGAGTAGCCAAGAAAAAGATCACAACGtgatttttccgaagattctAAAGCTACCTTCTGAGGATCGTACTAAATCAAGGAATGAAGAAAAATGGGGAAATAAAGTCTTGCTTTCGCCGATGCAGAATCATAATGCGGTGAGAAGTTCTCCGGAATCGATAGAGCaggaaaaatatcgaaattggaACAACGTGATGTTGTCGGCGATCCAGAATCAGAAAATAAATACGGAACTGGAAGAGAAATACCAGAACTGGAATAATGTGTTGTTGTCGGCGATTCGGGAGCAAAGTGTTGCTGTTGAAAGTATAAGTAAGATGGAGCAGACTCCGATTTTGAAGAGGTTTTTGGGAGAGTCGAATTTACCGACGAATGTGGATGCTGTGAACATGGAACGTTGGATGCTGGGATCGGGAGTGCAGCAGAGCCAAGGCGAAGTTGCGAAAAAGAGGAAGAGGAAGGTCCCTGTGAAAGTCGAGGAAGAGAACGATGGTGGTGATGCGAAACGTATAGCGATTTATGGCTTTATTTCAGAGGAAccgcaaaaatcgaaatccagGCAGTATAAGAATTATTCGTCAGAAGATTTGGATGCGGCCATAAAAGATGTACGCAATGAAATGCCCATCTCTGAGGCCGCCAAAAAACATGGAATCCCTTCCAGAACActCTACGACAAAGCCAATCGTCTAAACATCTTGATATCTTCGAAACGTGGACCAAAAAGCGAAAAATCGACTGGGGtcgattataatttccaaagaacCGCCGCTTTCCCTTCCGGTTTTGGGAGGAACGATAACGGAAGAATTTACAACCCTCGATATTCCGAATCTGATGATGCTCAACATGATCTCGATATGAGCGACAGTTCTTTTATTGAGAGAGCCAACAGCCCGTACGATGATGGCATTTCAGGGAACAACGTCATTACCTCTCCCCTTTTGCCAGTAATAAAAACAGAGGCCTTATTCGAGAGGCAAGATGGGCCTACCTTTTAA
- Protein Sequence
- MSYLAVNWNHHTDNFIKTVEDLYETGVLADMAISVSDSPYGPLKCHKMILVAASPLFRKLILSHDDNEKLIMHLHEVSYHDINLLLQYMYKGHMNVSQKELKDILPVAKSLKIQGIGSDDSEDVKEMKNIEVRALGAEEYRQNFQNDSPLDLSRKYVNGTSCNWNLASTSFPPSQNPVKDCREKSPNPKKAIILKVQSPEKSQNWGNVIISKIGTETDRPESRNQEKAQNWADKAIISKIEATVKEDRPKSSSQEKDHNVIFPKILKLPSEDRTKSRNEEKWGNKVLLSPMQNHNAVRSSPESIEQEKYRNWNNVMLSAIQNQKINTELEEKYQNWNNVLLSAIREQSVAVESISKMEQTPILKRFLGESNLPTNVDAVNMERWMLGSGVQQSQGEVAKKRKRKVPVKVEEENDGGDAKRIAIYGFISEEPQKSKSRQYKNYSSEDLDAAIKDVRNEMPISEAAKKHGIPSRTLYDKANRLNILISSKRGPKSEKSTGVDYNFQRTAAFPSGFGRNDNGRIYNPRYSESDDAQHDLDMSDSSFIERANSPYDDGISGNNVITSPLLPVIKTEALFERQDGPTF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01213448;
- 90% Identity
- iTF_01213448;
- 80% Identity
- iTF_01213448;