Pequ020056.1
Basic Information
- Insect
- Platygaster equestris
- Gene Symbol
- br
- Assembly
- GCA_030522785.1
- Location
- JAPYZK010012486.1:2547-9771[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.0025 5 8.0 0.0 25 37 201 214 185 220 0.79 2 2 1.2e-09 2.4e-06 28.2 0.0 5 41 232 268 230 271 0.89
Sequence Information
- Coding Sequence
- atGATTGTTCGAGCTAGTGACCAAAATTTCCTCTCGGGTCTTGTGCACCTACTTCTAGCGGAAAACTCTTCTGCCCTTGTTGATGTGACCCTTGTTGCTGAAGGCCATCAGATCCAAGCGCATCGAATTATTCTGAGCGCGTGTAGTACATTGTTCAAGGAATTGTTAAATGGAGCGTATGAGGATCACCCGACAATAATCCTCAGCGACATCGCAGCCGAGGACATGAAAATGCTGATCGAGTACAGTTACCGCGGTGTCGCTCATGTACCTAAAGAACGGATCAACAGTTTTCTCGAGGCGgcccattttttaaaaatctcaagtcTCATGCacGTTGACGGACTTGAAGAAGACATGCAGACTGAACGAGATCCTCTAAGCGCACCTTTGAATTCTCCGTCGAGGGTTTCCGACACAGATATCGTAGAGTCTTTCAAAGAAGTTGAAGATTGCATGACCGATGATTTCACCGAAGCCGTCATAAGGAACAAAAGACGTAGAAGAAGAAACTCCCTGCAAAAAGATTACgacgaaaaaatgttggagacCGCGATAAGCGATTTGAAGGCGGGACAAACTTTGGTCGAGGCGTCTTTGAAGAATAGCATTCCTCGTTCAACGCTGTACATGAGAGCCAAGACTTTGGGGATCCAAATGAACACTGCGAGAAACGAGTATCCTGTGGAGTGTATGAAGAATGCTATCGACGCTGTTGTCGCTGGCTCGAGTTTGCAGCAAGCCGCGGAAATGAACGGAATACCAAAAACTGTGTTATGGCGACGGATCAACAAAGAAGGTTATAGAATACAATTACGATCGGACAACAGAAAGGCATATGATAATAACAAAAGGGAAGCTGCGTTAAAAGCACTCGAGCGGGGTGAAAATCTCACCAAAGTTTCGCAAGAATTCCAG
- Protein Sequence
- MIVRASDQNFLSGLVHLLLAENSSALVDVTLVAEGHQIQAHRIILSACSTLFKELLNGAYEDHPTIILSDIAAEDMKMLIEYSYRGVAHVPKERINSFLEAAHFLKISSLMHVDGLEEDMQTERDPLSAPLNSPSRVSDTDIVESFKEVEDCMTDDFTEAVIRNKRRRRRNSLQKDYDEKMLETAISDLKAGQTLVEASLKNSIPRSTLYMRAKTLGIQMNTARNEYPVECMKNAIDAVVAGSSLQQAAEMNGIPKTVLWRRINKEGYRIQLRSDNRKAYDNNKREAALKALERGENLTKVSQEFQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01213428;
- 90% Identity
- iTF_01213428;
- 80% Identity
- iTF_01213428;