Ppen019088.1
Basic Information
- Insect
- Platycnemis pennipes
- Gene Symbol
- -
- Assembly
- GCA_933228905.1
- Location
- CAKOGJ010000275.1:30915-58568[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 9.6 6.8e+03 0.8 0.1 1 8 111 118 111 134 0.77 2 16 5 3.6e+03 1.7 2.0 1 23 137 160 137 160 0.84 3 16 0.0062 4.4 10.9 0.0 2 23 164 186 164 186 0.92 4 16 5 3.6e+03 1.7 0.5 2 23 190 212 189 212 0.93 5 16 7.8 5.6e+03 1.1 2.0 1 22 259 279 259 281 0.80 6 16 0.1 75 7.0 0.1 3 19 391 407 390 410 0.93 7 16 0.044 31 8.2 0.0 2 23 648 670 647 670 0.93 8 16 0.068 49 7.6 1.7 1 23 723 746 723 746 0.97 9 16 0.12 89 6.8 0.7 1 23 758 781 758 781 0.98 10 16 0.044 32 8.2 0.9 1 23 787 810 787 810 0.96 11 16 0.71 5.1e+02 4.4 0.2 2 23 817 839 817 839 0.93 12 16 0.0012 0.85 13.1 1.9 1 23 847 870 847 870 0.97 13 16 0.0001 0.073 16.5 0.6 1 23 876 898 876 898 0.96 14 16 0.12 84 6.8 0.3 2 12 905 915 904 918 0.87 15 16 0.00034 0.24 14.8 0.4 6 23 1003 1020 1001 1020 0.97 16 16 0.0014 0.98 12.9 1.9 2 23 1027 1049 1026 1050 0.93
Sequence Information
- Coding Sequence
- ATGAATGAAAACCTTGAAGATGGTGCAACTTCTGGAAAGCCCAGGAGGTATTCTAGTGTACCCATTGCTTTACTACCAGAAAGTCGAACTTATGGTCGGAAGACCCTTGGTGTCAAGATGAAATCAGGGGAGGGAGATGCAGGTAGTGAACGTGATTACTATGAGGAAAGTGATAGCCAAGGTGAGAGTGACAGCGGTGACAGTAGCCCGCGCAGGGTTCGATATTCGAAGATAACGAGGCATAAAACATCAGGGCCACACGGAACCCGAAGAGGTCAGCATGATAGGAAAAAAGGAACTCTTTCCGGTGGGAAGTGTACCACACGCCCTCATGCGTGTCCAATTTGTGGACAGTGGTTCTTGATGAGGGAGAAGCTCGTACTCCATGAAGTAATGAACCATGGGATGCACCATTGCCGTCACTGTTCAGCTGTTTTTCCTTCTGCTGATGAAGAGGAGGAGCATCGTAAAGCCAATCACTTACCTCCTGTTTGTGAAACATGTAAAAGACCTTTCCAGAATGCTGTGGCCTTAGCTAGACATCTTTCTGCAGCCCATGATGTCTGTACATGTCTATTATGTGGTGTCTTAGTCAGACCTCGTGCGTCTTATGCCCTTCATGTGCGTCGCAAACACTTTTGTGTTCGGGAAGACTATGACGATGAAACTGTGGGAGAATGGGGATCTCCAGAAGTCCCAGCAGAAATAGAGGGTGAGATAGAAGAAACAGCAATTTTACCAAATTTAATTGAAGATGCTGATGGTGCGTGGTCATTTATGTGTCGTCTCTGCGGTAAGGAGCGCAGGAAAACGGACCTTTTTGGACACTTTTTCTCATATCATCGCCTTTCATTGCCTTGTCTTGTTGACCTCCTATGGCAGGAACTTGGTAGGGTAGTGATTGCTGGTGCTCCACCGGCACGTAGTCCAGACAGGGAAGAAGATGATGAAGACCCTGATGTTATGCCTCCTCCAATACAGACGCCTTCTGCATCTCGACAGATAAAGGCGGTAACACCCACTACTGCCCCATCCACCACGGAAGAAGAGAATGCTGATGAAGAAGAGGAAACATCTTGCTCAGTTTGTGGGTCAGCATACCCGACAGAAGGAGATGTGACTACGACTCCCAAGCAGGCCCACATGGTTTTCTGCACCAAAAAACCTTTTTGTCGATCATGTGGTTATACCACCACTTCAGAAGAAGATTTAGAAAAACATGCAGACTCAGTATGTCCTCTATCTACTGCTTTGTGGCCTGAACTAGGAGGGGTGCCATGCCCTTTCTGTCGTGCTCCTGTTTCTGATGGTGCTAGTGGGTATGAAAAACACATGATAACGGAGCATGGGTGGCAGCGAACTGGCAATGCAGACCCTCCTATTGTCTGTGATGACCTTCTTCGCCCTGGACCATCAGTTACATGTTCCCTTTGTGGTGAACAAAGTGGCGTTACTTTACCAAAAGATGTACATTCTTTGTTTGAACACCTGCAGAATCATAGTCTTACTCTTGGGCCTGCCCTTTTTACTCTATCTGCGATAGGTGCTGCATTAGAACGAGCTGCTGCCCCAGTTGCGCAAGAGGTGGGGATGGATGGGGATGATGTGGGGGTTGGGGAGAAGGGAGAAGAGGGTAATTATGATTCAAGTGATGAGGGTGGATCATCTATTGATTTTGAGGACATGGAAAGCTATGTAGGGGGTATGGATTTCTCAGGGATGGATGCTTGTGAAGATGAAGATGATGATATTGTTCCTCCAAATGCTCTTGACAGTGACTTAGGAGAGGCTGACATTGACCCTCATGATGTCGAGCTGCTGATAGGTGATGCTAGCAGTGGAGATGAAGATGAATCACTTATGCGACCATGTAGAGTAGAGAAAGTGGATGAGGCTGTGGCAGGGATTCCTAATGCTGAAAAGCAGTCATTAGAACCTTTGGAATGTGAATTGTGCCCTAGACAGTTTGACAGTGGAGATGAATACCGCCTCCACCTTCAGGCAGTCCATCGAATGACTTTTGGGGAAGTAGAGGAATCAAAAGTTAAGGTAGAGCCCAAGGTCCGATCACCTCGTGCATGCCGCTTCTGCTCTCTTCAGCTCCAAAGCAGATGGGAACGAAGTGGCCATGAAGTTGGAATTCATCAAGAGGAACGAGAGTCATTTTACAGATGTTATGCCTGTGATGACACCTTTTCAAGCAGGGTTTGTGTACGACGGCACTTGGAAACAGCCCATCCTGATGAGTTGCCATATGATAAGAGAATGATTTTTAAGTGTCGGCGGTGTCTTGTTCTTTTCCCTCGATTAGGTGCTCTAAAAGATCATTCGCGAACTAAACATCCAGGGGCCATAGTGTATAATTGTCGCTTTTGCCCCTCTGTTCTAAAAACAAGAAAAACTCTGAGACAACATGCCAAAGTAGTGCATTCTGAGTCACGCCGACGTGAATGTTCCCTGTGTGGGAAAGTGCTATGGAGTAAGCGTGCATATGGAATTCATTATAGAATGAAGCATAGCAAGACCACTAAAGTTGGCTTCCGATGTCGTATTTGCCAGAAGAGATTCGACTCAAAAGATGAAAGGAAACTCCACTACCAAATTGATCATGAAAATGAGAGTCCATACCATTGTCCAGATTGTGGTAAGGGATTTGCTTCAAAATCAGGGATGTATGGTCATCGGCAGCTCCATACTGGCACAGGAATATCTCGCTGTGAGCATTGTGGCAAAGAATTTACGGGCCCTGAGGGGCAGGCTGGAGGAGGAATGAGGAATTCATTCAGAGTAGGAAGGACCGAGAAGGGTTCTAATCATGGAGAGGCCAATGGCCTCCGGTTTGGAAGTGACGCCACCCCCTCACCGACGACGGGCATCGACAAAGTTACCCCCGAATTCGGAGCTGATCATCATAACCTTTCGATTATCCTTCCACTTGTAATGCAGACTCCATCGGTGCTGAATACGTCCACTATCTCCCTCCATTTCAGTTTGTTCGCTATGAGGTGCGAGAAGGTGTTCTCTCAACAATCCCGATTGCGCGCGCACCTCATGACCCACACAGGGCTCAAGCATATGCGCTGTTTGCTGTGTGACAAGGCTTACTCCGTGCGCAAGTCACTGAGGCGGCATCTTCTAGAGAAGCACCACATCTCGCCCGAGCATCCACACTACAAGCGCTGCTTCCACGCAATGTCCCCAGAGGAGGCAGGTCTTCCCCTACTGGCTGCTGCAAGGGCTCTGGCATTGGGAGCTGCTGCAGCTGCGGCTCATGCCGCAGCTGTAGGAGGAGTGGATGTACCAGGTGGTGAATTGGGTccggggggcgagcaagaagatgatgatgacgacgacgatgacgatgatgaagaggatgacgagagtgatggtagcccagatcgggagggttcagtTGATCCACCTCAACCATGGCCAGTGGATATGACATGGACTGCGGGAAGGGAGACTGAGGGAGCAGGAAGGAGAGGGAGGCGGGGTAGGGGTAGGAGTGCCAGTCGTCGAGGAGAGGGAACAACAAGGGGGAGGCCAAGGCGTTCCCCAGGAAGGCCTAGGGGCTCAAGGGCAAGCACAGTGAGCAGGGCTTCTGTCGTTGGAAGTGCTCCGAGGAGAAGAGGAAGCGCTACGGGTAAGAAGAGACGGGTGGAGGCTATTGCAGAGAGTTTAATGCAGAACACCACGAAGGGGATATTATTGGGAGTGGGTGAAGAGAGTAGGGATACGGGCACATCAGGTGGAACTGGTGAGGGTGGGGATGAGCCAAGCCAAGATGCTGTGGCTGGAGTGAGTGGGGTTGGACCTTCAGTTGATCCTGGGGTGGTGAGCATTAAGCAAGAGTCCTCAGAAGGAGATGATGAGAATATGGTTGGAAAAAATGGGGTAGAAGAGAATGAAAGGAGGAAGTCTCAGGTGAGTGAAATGGGTGCACATTGGTTGGCTGGGGAATAA
- Protein Sequence
- MNENLEDGATSGKPRRYSSVPIALLPESRTYGRKTLGVKMKSGEGDAGSERDYYEESDSQGESDSGDSSPRRVRYSKITRHKTSGPHGTRRGQHDRKKGTLSGGKCTTRPHACPICGQWFLMREKLVLHEVMNHGMHHCRHCSAVFPSADEEEEHRKANHLPPVCETCKRPFQNAVALARHLSAAHDVCTCLLCGVLVRPRASYALHVRRKHFCVREDYDDETVGEWGSPEVPAEIEGEIEETAILPNLIEDADGAWSFMCRLCGKERRKTDLFGHFFSYHRLSLPCLVDLLWQELGRVVIAGAPPARSPDREEDDEDPDVMPPPIQTPSASRQIKAVTPTTAPSTTEEENADEEEETSCSVCGSAYPTEGDVTTTPKQAHMVFCTKKPFCRSCGYTTTSEEDLEKHADSVCPLSTALWPELGGVPCPFCRAPVSDGASGYEKHMITEHGWQRTGNADPPIVCDDLLRPGPSVTCSLCGEQSGVTLPKDVHSLFEHLQNHSLTLGPALFTLSAIGAALERAAAPVAQEVGMDGDDVGVGEKGEEGNYDSSDEGGSSIDFEDMESYVGGMDFSGMDACEDEDDDIVPPNALDSDLGEADIDPHDVELLIGDASSGDEDESLMRPCRVEKVDEAVAGIPNAEKQSLEPLECELCPRQFDSGDEYRLHLQAVHRMTFGEVEESKVKVEPKVRSPRACRFCSLQLQSRWERSGHEVGIHQEERESFYRCYACDDTFSSRVCVRRHLETAHPDELPYDKRMIFKCRRCLVLFPRLGALKDHSRTKHPGAIVYNCRFCPSVLKTRKTLRQHAKVVHSESRRRECSLCGKVLWSKRAYGIHYRMKHSKTTKVGFRCRICQKRFDSKDERKLHYQIDHENESPYHCPDCGKGFASKSGMYGHRQLHTGTGISRCEHCGKEFTGPEGQAGGGMRNSFRVGRTEKGSNHGEANGLRFGSDATPSPTTGIDKVTPEFGADHHNLSIILPLVMQTPSVLNTSTISLHFSLFAMRCEKVFSQQSRLRAHLMTHTGLKHMRCLLCDKAYSVRKSLRRHLLEKHHISPEHPHYKRCFHAMSPEEAGLPLLAAARALALGAAAAAAHAAAVGGVDVPGGELGPGGEQEDDDDDDDDDDEEDDESDGSPDREGSVDPPQPWPVDMTWTAGRETEGAGRRGRRGRGRSASRRGEGTTRGRPRRSPGRPRGSRASTVSRASVVGSAPRRRGSATGKKRRVEAIAESLMQNTTKGILLGVGEESRDTGTSGGTGEGGDEPSQDAVAGVSGVGPSVDPGVVSIKQESSEGDDENMVGKNGVEENERRKSQVSEMGAHWLAGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -