Basic Information

Insect: Platycnemis pennipes
Gene Symbol: RREB1
Assembly: GCA_933228905.1
Location: CAKOGJ010002369.1:93012-102072[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0017 1.2 12.7 0.3 1 23 219 241 219 241 0.99

2 15 8.8e-06 0.0063 19.8 0.2 1 23 268 290 268 290 0.98

3 15 3e-06 0.0021 21.3 2.5 1 23 296 318 296 318 0.99

4 15 0.0017 1.2 12.6 0.4 2 23 404 426 403 426 0.92

5 15 1.3 9.1e+02 3.6 1.3 1 23 511 534 511 534 0.87

6 15 0.049 35 8.0 0.5 1 23 712 734 712 734 0.94

7 15 0.057 40 7.8 2.3 1 23 751 774 751 774 0.96

8 15 0.00058 0.42 14.1 2.5 1 23 780 803 780 803 0.97

9 15 0.02 14 9.3 4.9 1 23 1291 1314 1291 1314 0.95

10 15 0.00015 0.11 15.9 0.5 2 23 1659 1680 1658 1680 0.97

11 15 0.15 1e+02 6.6 5.2 1 23 1686 1709 1686 1709 0.97

12 15 0.0043 3.1 11.4 0.8 1 23 1767 1791 1767 1791 0.93

13 15 0.031 22 8.6 0.7 1 23 1994 2017 1994 2017 0.95

14 15 0.024 17 9.0 0.3 2 23 2083 2104 2082 2104 0.92

15 15 0.011 7.6 10.1 4.5 1 23 2110 2132 2110 2132 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0017	1.2	12.7	0.3	1	23	219	241	219	241	0.99
2	15	8.8e-06	0.0063	19.8	0.2	1	23	268	290	268	290	0.98
3	15	3e-06	0.0021	21.3	2.5	1	23	296	318	296	318	0.99
4	15	0.0017	1.2	12.6	0.4	2	23	404	426	403	426	0.92
5	15	1.3	9.1e+02	3.6	1.3	1	23	511	534	511	534	0.87
6	15	0.049	35	8.0	0.5	1	23	712	734	712	734	0.94
7	15	0.057	40	7.8	2.3	1	23	751	774	751	774	0.96
8	15	0.00058	0.42	14.1	2.5	1	23	780	803	780	803	0.97
9	15	0.02	14	9.3	4.9	1	23	1291	1314	1291	1314	0.95
10	15	0.00015	0.11	15.9	0.5	2	23	1659	1680	1658	1680	0.97
11	15	0.15	1e+02	6.6	5.2	1	23	1686	1709	1686	1709	0.97
12	15	0.0043	3.1	11.4	0.8	1	23	1767	1791	1767	1791	0.93
13	15	0.031	22	8.6	0.7	1	23	1994	2017	1994	2017	0.95
14	15	0.024	17	9.0	0.3	2	23	2083	2104	2082	2104	0.92
15	15	0.011	7.6	10.1	4.5	1	23	2110	2132	2110	2132	0.98

Sequence Information

Coding Sequence: ATGGCTCTGACTGTTCAATTAAGCCTTCCATCCAAAATGCGGCTCAAGGGCGCACAGCTCGGGTGCGATTCGGCCCTGAGGGACGAAGTGGAATCGGAGAGAATGGAGATAACCCGCATGGAGAAGGAAGAGGAGCAGAGCGAAGGTGATAAGGTGGCTGGTGACGAAGGTGGTGCGGAAGCGGAGTGTCCTAAAAGAGAGGTGGAGGAGACGGAGGAGGTCCCAGAGTCGATGGAGCAGCAGGCAGCCAAGGAAGAGGAGATGAGTGTGGAGCAGGAGAGGGGCGGTCCAGTGACGAGGCAGCGGAAGGAGGATGCAGCCGTAGTTGCAAAACCCATCGTCACCCCTGCGGCCGCTGACCACGAGTCCAACTTGATCGGTGCCAGGAAGAGAAAATCCAACAAAGTCGTGAAGCGAGAGGTGGAACCCAGGGTGGAAGTCGTAACGGAGGTCGTGCAGGAAATTATCGCAGAGACCTCTCAACACGAAGAAACAAAGCAGGATGGAGAGACATCAGTTGCCGAAGAGGAACCAGAATCCTCACAGCCTACCGCCGAAGCAGAGGACGCGGTGGAGGAACACATTGGGCAGCTGGATGAGGGCAAGAAGGGAGATACGAAGGCGCAGAAGGGCGAGGATGAAGAAGACATGCGCTACGTTTGTCCCATATGCGAGGATGTCCTCAGCTCGCAACACCTCTTCACTGTTCACATACGATCTCACAATACACCCGGCCAGACACCGGGCGACGGCTCAACGTCCTCGGTCTCCAACACTGCGTCCTCCAACGGCCTAAAGGCCTTCAGCTGCAGGATATGTGGGAAGGCACTCAGTTCCTCTAGTTCCCTCGACCGccacatgcttgttcactccggggagcggcccttcaagtgccgactgtgcggagtagccttcacgaccaacggcaacatgcaccggcacatgaggacccacgccgccaaCCCGCAGTCCGCGAAGGAACCGGAGGAGGTGAGCGACTGCGGAAGTACGGACAGCAGCGGTTCGAAGAGGGGAAAGGTGACGCCCAAAAAGTCAGTGGCGCCTCCCGCGACGACGCCGTCGCCGGGCAGCGGAAGGAAGAGGGCGGCCAACGGTAGCACCGTCGAGGCCAATTCCGGCAGGTTGCAAGGCAGGGGAGGGTATTCTCCCAGGACGAGGACCTCGAAGGAGTCCTCGGAGATGGGCTGGAGGTGCCTCTCCTGCGACATCTCCTTCAAAAGCCAAAAAGACCTGCGCGCCCATGCTTACATGACGCACAGGGAACTCGAGCCAGAGGAGGACGAGGACGACGACTTTGACGACGAGGATTACGAGGAGGAGGATAGGTGCTCCGGGAGGAAGCGGACCAGAAGGACTGGCGAGAGAGAGGAGAGGTCTCAGCCCAATCAGACACCTACGCTTGGGTTCCAAGACTTGACTTTCGTGGACTTCTCGACGCAGAAGTTCCCGCTGATCGCCAATGCCGCTTGCGAGAGGGCCGTGCACAGGGCTTCTAGCGAATTCCACCGCTTCCAATGCGGGCGGTGTGACCGAGCCTTTCCGTGTGGGTCGGCCCTCCACATACACGCAGACACTCGCCATCGAGCGTCGTCGACTTCACCGGCGACCGCGGCGCCGCCAACGGCTGACGATCCGAAGGAGGACTTCTTCGCGGTGCTTAACCTCCAGAATAAGACGAGATGCAGCACTTCCCCTCCTCCCACAGTCAGCCAAAATACCCTTCCTCCACACGTCAGGCTTTTCCCTCATTCGAATTCCCCTTCCCTATCCCACTTGCCCTACGCCGAAAGGAAGAGGAGGGAGGAGGAGTTCGACAACGCCTTCTACTTCAACAGTCCGGCGATGAAACCCAAGGACTTGCACATCAAGAGGTCCACCAAAGGAACGGAAACCGATTCCGGGAGGGAAGCCTCTGACGCGCCAAGAGATTTGGCGGATATCAACAGCATTATATCTGCCGTTGCAGGGAATGGTTCGGAGTTTATGAGGCCGATGGAGGAGGAGGAGGAGGACGATGGGGAGGCGGGTGGCTATGAGGAAGAGGAGGAGGATCAGGAGGAGGAAGACGCCACTTTTGCCGCGGAATTGAGGGAGATGAAGATGCGGGGAGAATTCCCGTGCAAACTCTGCCCGGCCGTGTTTCCCAATCTGCGCGCTCTGAAGGGACACTGTCGGAACCACATTGCAGAAATTGTCGAGGGTCCAGGCGAGGATGAAAACGAAAACCGCTACGTATGCTGTCTATGCGGCCGCCGAGTTGCCTccgacaagcacggtctgatgcgtcatcttcggtcacacaacggggagaggccattcaggtgcgccctctgcggctatgcctttaccaccaaggcaaattgcgagaggcacttaaggAACAGACATTCTAAAGTTTCCAGGGATGAAGTCAGGAGATCCGTCATCTACTCACCCATTGCCGATGAGAATGTCGGTGCTTTCCACGTCGGCAACGTTCAGAGGGACTTAGCAGAGAAGTCGGGAAATACGCGGTTGGAGTGCACTTTTGCCTCCTCATCAACTCAGTGCACACCGCCTAGAATTCCGTCTCCACCAACTAAGCTGTCGGCTCTCCTGACTGCAATATCCGAGGCTAAAAACAATCTGGCGAGATCAGAATCGTTCTGTAAGGATCACGAGCAGGATGAGAAACCTAAGTTTGGAGATAAGGATTTAGAAATGAGGATCAGCAACAAACAGGGCGGCCACATGGATGATTTGTCCAGCGTGGAAGCGCTAGTCAATTTTGCCAAAAGTCCATCTCTTCCAGCGCCACTTAAGATGGTGAGTGGACAAATTCCACTTAATATGCATCAGCACCTTTTCCGCCCAATTGCTGTCAAGCAGGAAGTAGTAAAGGAGACCGTACCGGTTGGTGCGGAGGCCCCGTTAGATTTAAGTATGGACGCCCTTGACTTGAGCAGTAAAAAAGTGCAAGATGAACCGGAGGATTTATCTAGGCCCTCAACTGGGAAGCTACGAACAAATATGCAGGCACCCGCCTCACCTTCTGTTGGAAACTTCAATGGAGGGCTGCTCATGCCAGCAAGATTCCCATCAGTGCCAACAACTAGGCCGATGGCTCCACCTCCCTCGACGAATAGCTCGCAACTCAGTCCACCCATGTTAAAGGTTGACTCATCCCCAATTTCCATTTCAAATGGAGTACCAAAGATGGACATTCCAATGTCAAATCCACCTTCTCAACCACCATTCTATTCCAATTCCCTCCATATGTACCTGAACTCCCAATTCCCAGCAACGGTCTCCACACCAACAAGACCGCCTGTCGGTAATTTTCCATACCTGCTTCCTCTCCCTTTCCCTAGCTCGGGAGCATCCCTCATTTCTCAGCTTCAACCCACCCAAGTCCAGTCACCATCCCTGCACCCTTCTCCCCTCATATCTCCCTCAGTTACCCAATCCCTGTCTTCTCAAACGGTGCCGTCCTACCCAGGCATCCCCACATCCTGCGCTCCTCCCTCAATGGAGCGCCTGGAAAAGGAAATTCTTCGTAATCTGCAACTTTCTTCCGGTGGGTCTTTAGTTTTGGACCCGGCAGCCATGAATGAACGGATACAGGCCCTGGCAATCGCTGCGGCGGCTGCCGCGGGATTTCCTCCGGCTGCTACTCCTTCAGAAGTCCCTCCGAAGCCTGTACTATCTCAAACCAAAGAATCAAAGCCAAATGATCCTATCGTAACTACGATGAGGGAAGCCACTCCATCCAAAGAAGATAACCGAATGCAATCCGGAGTCAAGATGGTGATCAAGAACGGGGTGCTAATGCCAAAGCAGAAGCAGAGGAGATACAGAACGGAACGCCCTTTCGCGTGCTGCCACTGCTCGGCGAGATTTACGCTGCGTTCCAACATGGAGCGGCACATTAAGCAGCAGCATCCAGAATTCTGGAGTCAAAGGCCGCGAGGAGGTAGACGAGGAGGCAGTGCTGGTCTCTCTGGCGTCCCTTCGTCCAGAACGGACACATCTCCATCGGCATCTGATGGCAGGCTTTCTCACTCGCCAGATGGACCGCTGCCCCCAGCGGCTTCCCTGCCTGCTGAATCTGCTGGAAAGCCTGGCAGTGAAAATGGTTCCGACGACTACAGAGACGACGATATGATGGCGGATGAGGTCGAAGGTAGTGAGCCTCTTTCCCCGACTTGCGACAGAGTTTCCACTCCAGAATCTTCTACGAATATCGACGATACTAGTAATAAGACCAAAGATAACAATAAGAAAGTGATCTCAGAAGAGGTGAAGAATGCTATTGCTCAGCAACTCAAATCAAAACTTGTCGCCGATAGTCGATCTAGCAACAACTCTTTGTGCTCAGGAGAGGAGGTTGAATCGAAAAGAATAGATGCCAAAGATGAGGGTGGGAAGACAGTTAAAGACACTAAGGGTAAAGGTGCCGCAGAGGACGAAGATAGTGGTGAACTGGTGATAGACGAGGAAAAGTTGGACACGGAGAACGACTCCACTGCGGATAAGGGGAAAAGCGCAATATGTTCAGAAACCAAAGAAGACGAATCTAGTGGTGTGGATCTAGCCAGTGTTTCTAAGTTATTAGACAACGCGTCCACGCAAACGTTTCAACAGTATTTCAGGTCGGAGGAAGACGAAGAGATGGAGGAGACTGAGCGCAGGAGTTCGCGACGTGGTGTGGACGAGGGCTACGACGGGGGTGAGGACGGCGAGGACGAGGAGGAGGAAGAAGGCTGGAAGAGCGGAGACGAGACCGGAGGCAGCAAGTGCGCCTCCTCGGGCGAAGAGGGTTCCCTGAAGGGAAACAATCGCGGAAGGGCGGAAGACAGGGACGACAGCCTGGAGCGCAAGCTCGCCAACGTGACCGTGGAGGCGGCAACGGCTGCGGACACGGAGGACAAGGGAAAGCGGCGTAGCGCGTACTCCTCGGCGCCGAACCGCGTCTCCtgcccgtactgcagcaggaagttcccatggcgcagctccctgaggcgccacatcctgacgcatactggccagaagccttataagtgcgcCCACTGTCCCCTGTTGTTCACCACCAAGTCTAATTGCGACAGGCACCTCCTGAGGAAGCACGGGAGGGGCAACGGCGGCGGGGGCAGTGGCGGCAGCGGGGGCTGTGGTGGGAGCAGTAGCGGCGCGGAGGACAACGCCTCGGTGGTCAGCTCCTCGGGCGGGGGCGGCCTTTCCCCCGGAGGCAGCGCCGCCTCCAGCGCGTACACGATGCGCAACGTCCCCGAGAGGCCTTACAAGTGCAGCGTCTGCCCGAGTTCCACCTTCTCCACGCAGAACAACCTGAAGAAGCACCTCGCCGCCAAGCACCAGCAGCATCTCCAGCCGCCGGCGTCGGGCAACCAGAGCGGTAGGCTGTCAACCTCTCCGCGCGGGGGTTCGGAGAAGGGCGGCTCCCTGTCCTCGGCGAGCAGTCCCCGCTGTGCCACGGAGGAGAGGGACGTGGATGACGAGGAAGACGAGGAGGGCCTCGTGGGCGCAGAGGATGATGAAGGACTGCTGGACGAGGACGATGACCCGGAGGAGGAGGAGGAGGAAGGGGAGTTCGAGGAGGACGAAGAGTCTCCCGATTGCAGTGCGAGCGACGTGGTTTGCAACGGCGAGGCTGCTCACGACCTCCGGAGCCAAACCAACGCCTTCAAAAAGAAAGACACGGCATCCCAGCAGTCGTCGAAGTCTCCCGAGAAAGTCCCTGACCAGCCCACCGCTAGCCACAACAAGCACCAGCTCCTAAACGGCAACCTACCTGTGGTTTCGGCTGACGAGGGAGAGCAAGCAAAGCAGGCCTGGGACAAGGGCCGAACGCCACCCTCTGCACCCTCGCTGCAGAGTCACCCGGTCCAGCtgccaccgactcagcagcatcatcatcaccaccatcatcatcaccaccacCACCCGGGATCTGACCTCCCATTCAAATGCCATCTCTGCGAGCGCAGCTATGCTGAGCGGAACGATGCGCTCAACCACATCAAGGATGCACACACCTCTGAGTATGAATTGCTTGTGGCCAAAGGAGCACTAGACTCAGCCAATGCAGTTTCGCCCGAGGACGCCCACAACAACAACCATCATATCGGCTCAACTAATAACAACATTGCTGGGTCAGACCAGGGAGGTGGGGAGGAGAGCCTAGAGCAACTGAGGGGAAAATTCCCAGACTATGCCAATAGAAAAGTTGTTTGTGCATTCTGCATTCGCCGTTTCTGGTCTGCTGAAGatctgcgacgacacatgcgcacgcatactggagaacgccccttttcttgtgacatctgcgcaaggcgttTTACTCTGAAGCACAGCATGCTGCGTCACCGCAAGAAGCACTCAAATGCGGAACGAGCATCAGGAGTTAGCATTCCCATTGTTGTTGCCACGTCTGAGGCTAGTGATGAAGAGGCCATCACTACAAGGCATAGGGCAACAGCTGGTGATTTGGTAGCAATAAACCACTTGAAATGGGAGAAGGGTGTGCATGGTGGGAAAGAGGATGAGGAGACTGAAGGTAAACGACGAAAACTCATCCCTCAGGAGATAAACCTTGCAGCTGCTATAGGAGGGGCAACAGGGGCTGGTGACTTGATTGGAAACCTGTTGGGAATTCAAGATAAGTCCTTAATTGAGAAGATGCTTCTTTCAAAGTCAGCTGATGATGCAGCAAAACTTTTAGGGGTTGATGGTCGTGATTGA
Protein Sequence: MALTVQLSLPSKMRLKGAQLGCDSALRDEVESERMEITRMEKEEEQSEGDKVAGDEGGAEAECPKREVEETEEVPESMEQQAAKEEEMSVEQERGGPVTRQRKEDAAVVAKPIVTPAAADHESNLIGARKRKSNKVVKREVEPRVEVVTEVVQEIIAETSQHEETKQDGETSVAEEEPESSQPTAEAEDAVEEHIGQLDEGKKGDTKAQKGEDEEDMRYVCPICEDVLSSQHLFTVHIRSHNTPGQTPGDGSTSSVSNTASSNGLKAFSCRICGKALSSSSSLDRHMLVHSGERPFKCRLCGVAFTTNGNMHRHMRTHAANPQSAKEPEEVSDCGSTDSSGSKRGKVTPKKSVAPPATTPSPGSGRKRAANGSTVEANSGRLQGRGGYSPRTRTSKESSEMGWRCLSCDISFKSQKDLRAHAYMTHRELEPEEDEDDDFDDEDYEEEDRCSGRKRTRRTGEREERSQPNQTPTLGFQDLTFVDFSTQKFPLIANAACERAVHRASSEFHRFQCGRCDRAFPCGSALHIHADTRHRASSTSPATAAPPTADDPKEDFFAVLNLQNKTRCSTSPPPTVSQNTLPPHVRLFPHSNSPSLSHLPYAERKRREEEFDNAFYFNSPAMKPKDLHIKRSTKGTETDSGREASDAPRDLADINSIISAVAGNGSEFMRPMEEEEEDDGEAGGYEEEEEDQEEEDATFAAELREMKMRGEFPCKLCPAVFPNLRALKGHCRNHIAEIVEGPGEDENENRYVCCLCGRRVASDKHGLMRHLRSHNGERPFRCALCGYAFTTKANCERHLRNRHSKVSRDEVRRSVIYSPIADENVGAFHVGNVQRDLAEKSGNTRLECTFASSSTQCTPPRIPSPPTKLSALLTAISEAKNNLARSESFCKDHEQDEKPKFGDKDLEMRISNKQGGHMDDLSSVEALVNFAKSPSLPAPLKMVSGQIPLNMHQHLFRPIAVKQEVVKETVPVGAEAPLDLSMDALDLSSKKVQDEPEDLSRPSTGKLRTNMQAPASPSVGNFNGGLLMPARFPSVPTTRPMAPPPSTNSSQLSPPMLKVDSSPISISNGVPKMDIPMSNPPSQPPFYSNSLHMYLNSQFPATVSTPTRPPVGNFPYLLPLPFPSSGASLISQLQPTQVQSPSLHPSPLISPSVTQSLSSQTVPSYPGIPTSCAPPSMERLEKEILRNLQLSSGGSLVLDPAAMNERIQALAIAAAAAAGFPPAATPSEVPPKPVLSQTKESKPNDPIVTTMREATPSKEDNRMQSGVKMVIKNGVLMPKQKQRRYRTERPFACCHCSARFTLRSNMERHIKQQHPEFWSQRPRGGRRGGSAGLSGVPSSRTDTSPSASDGRLSHSPDGPLPPAASLPAESAGKPGSENGSDDYRDDDMMADEVEGSEPLSPTCDRVSTPESSTNIDDTSNKTKDNNKKVISEEVKNAIAQQLKSKLVADSRSSNNSLCSGEEVESKRIDAKDEGGKTVKDTKGKGAAEDEDSGELVIDEEKLDTENDSTADKGKSAICSETKEDESSGVDLASVSKLLDNASTQTFQQYFRSEEDEEMEETERRSSRRGVDEGYDGGEDGEDEEEEEGWKSGDETGGSKCASSGEEGSLKGNNRGRAEDRDDSLERKLANVTVEAATAADTEDKGKRRSAYSSAPNRVSCPYCSRKFPWRSSLRRHILTHTGQKPYKCAHCPLLFTTKSNCDRHLLRKHGRGNGGGGSGGSGGCGGSSSGAEDNASVVSSSGGGGLSPGGSAASSAYTMRNVPERPYKCSVCPSSTFSTQNNLKKHLAAKHQQHLQPPASGNQSGRLSTSPRGGSEKGGSLSSASSPRCATEERDVDDEEDEEGLVGAEDDEGLLDEDDDPEEEEEEGEFEEDEESPDCSASDVVCNGEAAHDLRSQTNAFKKKDTASQQSSKSPEKVPDQPTASHNKHQLLNGNLPVVSADEGEQAKQAWDKGRTPPSAPSLQSHPVQLPPTQQHHHHHHHHHHHHPGSDLPFKCHLCERSYAERNDALNHIKDAHTSEYELLVAKGALDSANAVSPEDAHNNNHHIGSTNNNIAGSDQGGGEESLEQLRGKFPDYANRKVVCAFCIRRFWSAEDLRRHMRTHTGERPFSCDICARRFTLKHSMLRHRKKHSNAERASGVSIPIVVATSEASDEEAITTRHRATAGDLVAINHLKWEKGVHGGKEDEETEGKRRKLIPQEINLAAAIGGATGAGDLIGNLLGIQDKSLIEKMLLSKSADDAAKLLGVDGRD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00261406;
90% Identity: -
80% Identity: -