Ppen152071.1
Basic Information
- Insect
- Platycnemis pennipes
- Gene Symbol
- -
- Assembly
- GCA_933228905.1
- Location
- CAKOGJ010010401.1:631812-641058[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.1e-05 0.0076 19.6 0.2 1 23 683 705 683 705 0.97 2 12 4.5e-06 0.0032 20.8 1.6 3 23 753 774 751 774 0.97 3 12 5.8 4.2e+03 1.5 0.0 9 21 811 823 809 824 0.87 4 12 7.9 5.6e+03 1.1 3.8 1 23 832 855 832 855 0.94 5 12 3.6e-07 0.00026 24.2 0.8 1 23 861 883 861 883 0.99 6 12 0.0017 1.2 12.6 1.3 1 23 889 911 889 911 0.97 7 12 0.00032 0.23 14.9 0.6 1 23 916 938 916 938 0.98 8 12 0.00082 0.59 13.6 0.5 1 19 944 962 944 964 0.96 9 12 0.45 3.2e+02 5.0 0.8 5 23 964 982 963 982 0.91 10 12 0.00015 0.1 16.0 0.6 1 23 994 1016 994 1016 0.98 11 12 2.2e-05 0.016 18.6 0.9 1 23 1022 1044 1022 1044 0.97 12 12 5.3e-05 0.038 17.4 0.3 3 23 1053 1074 1051 1074 0.94
Sequence Information
- Coding Sequence
- ATGGAGGTTCGGAGGACGCTAGATTCCGGCCGGTACATTGAACGAGGGAATATCAGCCGAGTGGAATACGCAACATCCCGAATAAGCACTGCAAAGGAACTAAGGCCACCGATGGAGGACGAGGAAATAATCTATAGGTTGGAGCATCATTTTGGTCCGGAGGTTAACACGGCAATCATATCGCAGCAAATAAACACCATCCCACGATTATTGTCATTGCTCAGCCGATACGATAGGGTGGTGCCGCAGCCGATACAGGAGACGAAGGAAGGGAGCCAAAGAAGATGGACAGGAACAGAGGAAAGGAGAATTGATTTTAGAGGACGTGGATACAACCCACCACCTCAGAATCAAAATGGTAATAGATATCAACCTAATCCATCCGGAAAGCAGAGGCAGACATCTCCGGTGAGACGGTACAGCAGCCGAGAACAAATGGATGGACGGAGTTACGAAGAAAGACCACCCAGGGAGAATGCAAACATCCGCACGATGATTGTGGAAAACTCCAGGAGTAATGAAGAAAGGCATGAAGAGCAGGGAAACGCGAAGGGGCAAGTCGATGAAGATGGAATAGGAGGCGCATCAGAGGAACCCGTGATAGCCATTCTCCTAGCAGAAGACCCACCGGAGGAACTGATGAGGGACTTACGCAATTTGAAACAACTGCAGCGGGAGGATGAAAGGTTAGGTAAAATTGTAACGGCAGCAGAAACAGAAGAATCCAGAAAGGGATATCGATGGACGGAGGAAGGGCTGGTAAGAGAGACAAGGGGTAAACAAAAGGTGTGTATACCGGATAAGTTGTTCCCAAAATTAATATGGGAAATCCACAGGATGTATGGGCACCTGGGCGCAGCGAAGATACACAAAATGCTCATGGAGAGGTTTACGTACCGAAGATTCCCACGGGAAATTAGGAAGCTGATTGCCACCTGTGAGGAGTGCCAGCGATGTAAGGCGCCGAATTATAACAGCTACGCCGAGATGCAGACCGTGGTTCCGGATGGGGTGAATGACCTACTATGCGTGGATGTAATtggacccctgcccaagggtcagttcggatgtcaatacattctttcgacgatcgatggattctctaagtttataaaactgtatccactaagagcagccaccacacgaagtattgtGAATGCAATTTTCGGGCGACATATCCATTGTGCTGGAACGTACAAACGAATTCTGACAGATAGGGGAACCCAATTCACTAGCCCCGCATGGAAAAGGAAACTAACGCAGGAAGGGATTAAAGCTGTTTTCTGCAGTGTCAGGCACCCGCAGGCGAACCAAGTTGAGCGGTATCATCGCACTATCAAGACGATCTTGCGAATTTTCTGTCAAAACACACATGCCAGTTGGGTGAAGTGGATAGGAGTGGTTGAAACATGCTTGAATGACACCCACAATAGCACCACTGAAATAACGCCTACAGAAGCTCATTTCGGGCGCAAACCCGAAAGAATCTGGGACACTTGTATGACGGCAGACATCACCCAAGAAGAGGAAGATATTCCAGGGTTAGTTGAAAGAATCCGTAGTAGAATCTACACAAAGGGGCAGAAAAGGAGTGAGCGACACTCAAGAAAAACTCACAAGAGAGGGAAGAACTTCGAGATAGGAGATCGAGTTCTATTACGCACTAATCCTTCATCTGATAAGGAGAAGAAGATTTACCAAGGTTTCATGCCACTATTTGAGGGACCATTTATAATTGCTGAATCACGGGGAAGGGCCACGTTCGTGCTAAAGAACATGGAAACAGGAACGGAACGAGGAACTTTCCATGTATCCCACATGAAACCATACGTAGAAATCACTGCACTCACAACAACACCCACAGGAAACCAACTTCACACAGAACATCGCGCAAGCACAGTTGAGAGAGGACTGAGAACTGACTTCTATGACCAAGATACATCCTCGAGACTCCAGTCAAGCAGAGCCATTGTGGAGCTGGAAGCACTTAGGGAGCCCGAGATTGCCTCTAGTAGTATGTCGTGCCAACGGAAATCCACCGAGACGTTTATTTGCAGTGAATGTGGGGCTTCCTTTGACTCTCAGTCATCACTGTCGACGCACGTCAGGGATCACCAGAGGGTGGAAAAGAATGTGGGATCTGGTGAGGTGTGTGGACAGAGGAACGAGGGTGACCCACAGTTTCCTCACTCAGATTGGAACGACTTCACTCAGAAGAGTGACTTGAGCACGAGGAGGAAGAACACATTGTTCGGTTGTGACCATTGTGGCAAGGTCTACGCCCAGAAAGACCACCTGGTAGACCACATACGTTCAACCCACCTCGAGATGCGTAACCTCGAGTGCGGGGTCGCTGGGAGGACGTCGGACTACGCGGACGATTTGTTGGGGTCTCACAAGGAGGAGGAACGGATGGATTGCAGTGGTAATTGTTTCTCCAAGAAAGGGAAGCTGTGCGCACACGTCAACTCGGTTGACGTACAACTGAAGCCCTACTGTTGTAGCATCTGCGCCCAAGGCTTCTGGTGCAAGTCCAAGCTTAAGACCCACATAACCACGGTACACGTTTTGGagaggcgtttcaagtgtggggtgtgcgggaaggcttacaagatgtccacaagcctgaagattcacatgcggacgcacTCGTCTGAACGCCCTCACCGCTGCCCCTTCTGTCCGAAATCTTTTCTGTTGAAGTGGCTACTCACTTCCCACATGGAGTCACACAGTGGACTCACGTACGCCTGTGAGGTTTGCGGGAAGGAGTTCAACGAGTCCCGTCGGTTGCGTGGTCACAAGCGAAGGCACGCGAATGAGAGGTCTTACAGATGTGACCATTGCCCCAATGCATACAAGACTGCAGGTCACCTCGCTAGGCATTCCCAGTGCCACAAACTTTTCAAGACGAAGCAGGAGGTGAGGTGGCACGTGGTGAATCACTGCTCGGAGACGGCTGATAGGGCTGAGAGACCCTTCAAGTGCGAGGCGTGCTCGAAGAGGTTCAGAGTCAGAAGCAGTCTGACGGAGCATGCCGCGACGCACACTGGTCAGAGACCGCATGTGTGCACTGTGTGCTCGAAGGCGTTTGTAACCAAGAGTGGACTAGGCCGGCACCTTAAGCTGCACGATGAGAAGCGGGAGGTATTCGGGTGCGGAGATTGCGGAATGACGACGAGGAATAAGTACTACTTAAAGAGGCACATGGAGGCGGTACACGGCGAAAACAAGAAGCAAGATGGGGTGGGAGAAGAAGAGGAGGATGAGAAGTCGCGAAGCAGTTTTGAGATGATATGA
- Protein Sequence
- MEVRRTLDSGRYIERGNISRVEYATSRISTAKELRPPMEDEEIIYRLEHHFGPEVNTAIISQQINTIPRLLSLLSRYDRVVPQPIQETKEGSQRRWTGTEERRIDFRGRGYNPPPQNQNGNRYQPNPSGKQRQTSPVRRYSSREQMDGRSYEERPPRENANIRTMIVENSRSNEERHEEQGNAKGQVDEDGIGGASEEPVIAILLAEDPPEELMRDLRNLKQLQREDERLGKIVTAAETEESRKGYRWTEEGLVRETRGKQKVCIPDKLFPKLIWEIHRMYGHLGAAKIHKMLMERFTYRRFPREIRKLIATCEECQRCKAPNYNSYAEMQTVVPDGVNDLLCVDVIGPLPKGQFGCQYILSTIDGFSKFIKLYPLRAATTRSIVNAIFGRHIHCAGTYKRILTDRGTQFTSPAWKRKLTQEGIKAVFCSVRHPQANQVERYHRTIKTILRIFCQNTHASWVKWIGVVETCLNDTHNSTTEITPTEAHFGRKPERIWDTCMTADITQEEEDIPGLVERIRSRIYTKGQKRSERHSRKTHKRGKNFEIGDRVLLRTNPSSDKEKKIYQGFMPLFEGPFIIAESRGRATFVLKNMETGTERGTFHVSHMKPYVEITALTTTPTGNQLHTEHRASTVERGLRTDFYDQDTSSRLQSSRAIVELEALREPEIASSSMSCQRKSTETFICSECGASFDSQSSLSTHVRDHQRVEKNVGSGEVCGQRNEGDPQFPHSDWNDFTQKSDLSTRRKNTLFGCDHCGKVYAQKDHLVDHIRSTHLEMRNLECGVAGRTSDYADDLLGSHKEEERMDCSGNCFSKKGKLCAHVNSVDVQLKPYCCSICAQGFWCKSKLKTHITTVHVLERRFKCGVCGKAYKMSTSLKIHMRTHSSERPHRCPFCPKSFLLKWLLTSHMESHSGLTYACEVCGKEFNESRRLRGHKRRHANERSYRCDHCPNAYKTAGHLARHSQCHKLFKTKQEVRWHVVNHCSETADRAERPFKCEACSKRFRVRSSLTEHAATHTGQRPHVCTVCSKAFVTKSGLGRHLKLHDEKREVFGCGDCGMTTRNKYYLKRHMEAVHGENKKQDGVGEEEEDEKSRSSFEMI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -