Basic Information

Insect: Platycnemis pennipes
Gene Symbol: -
Assembly: GCA_933228905.1
Location: CAKOGJ010004780.1:62342-64048[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.016 11 9.6 2.6 1 23 93 116 93 116 0.93

2 14 1.6e-05 0.011 19.0 2.9 2 23 166 188 165 188 0.95

3 14 0.0039 2.8 11.5 0.2 1 23 220 243 220 243 0.94

4 14 0.00034 0.24 14.8 0.2 1 23 249 272 249 272 0.96

5 14 5.2e-05 0.037 17.4 2.1 1 23 278 300 278 300 0.98

6 14 0.0064 4.6 10.8 0.2 2 23 307 328 306 328 0.94

7 14 2.4e-06 0.0017 21.6 3.8 1 23 333 355 333 355 0.98

8 14 0.00014 0.1 16.0 6.5 1 23 361 383 361 383 0.97

9 14 0.00013 0.096 16.1 0.1 3 21 391 409 390 410 0.95

10 14 0.012 8.7 9.9 5.2 2 23 418 439 417 439 0.95

11 14 0.0041 2.9 11.4 6.3 1 23 444 466 444 467 0.95

12 14 0.0066 4.7 10.8 5.1 1 23 474 496 474 496 0.97

13 14 9.1e-07 0.00065 22.9 2.3 1 23 502 524 502 524 0.96

14 14 0.017 12 9.5 4.9 1 23 531 554 531 554 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.016	11	9.6	2.6	1	23	93	116	93	116	0.93
2	14	1.6e-05	0.011	19.0	2.9	2	23	166	188	165	188	0.95
3	14	0.0039	2.8	11.5	0.2	1	23	220	243	220	243	0.94
4	14	0.00034	0.24	14.8	0.2	1	23	249	272	249	272	0.96
5	14	5.2e-05	0.037	17.4	2.1	1	23	278	300	278	300	0.98
6	14	0.0064	4.6	10.8	0.2	2	23	307	328	306	328	0.94
7	14	2.4e-06	0.0017	21.6	3.8	1	23	333	355	333	355	0.98
8	14	0.00014	0.1	16.0	6.5	1	23	361	383	361	383	0.97
9	14	0.00013	0.096	16.1	0.1	3	21	391	409	390	410	0.95
10	14	0.012	8.7	9.9	5.2	2	23	418	439	417	439	0.95
11	14	0.0041	2.9	11.4	6.3	1	23	444	466	444	467	0.95
12	14	0.0066	4.7	10.8	5.1	1	23	474	496	474	496	0.97
13	14	9.1e-07	0.00065	22.9	2.3	1	23	502	524	502	524	0.96
14	14	0.017	12	9.5	4.9	1	23	531	554	531	554	0.95

Sequence Information

Coding Sequence: ATGGCTACCTGTGTGTGTTTGGAGCACTCAATTAATTTTCTTCCATTTCTTTTTCTAGATCAAGAGGCCTTTCACCAGGCTTCTTTCTCAAGATTGTCATCAAGTCCAGTTGTGGAGGAGGGGTCATCAGGAACGGTTTCAAACGCCACGATCACCATTGGTACGAGTGATGATGCCTCACGGAGACAGACCCTCACCGCAAGGAGTGGACCGAGTACCATCGCTGGGGTGTGCTTGGGTCTGTCCTCAGGCGGCCATCAGGTATTGAGCAAGAGGTTCCTTTGTGATGTGTGCGGGGCTTCCTTCACTTGCAAGCCTTTGCTGTGCACACACATAAGGGACCGCCACAGCTGGAACGTGACCACGGGCCCTTGCGGAGTCGGAGGACACTGCCAGGGGAAGGAGGATGATCCTAATTTTCCCTGTCCTGATCACGGAGGGGACATCTTCGAGTACCACCAGACCTTTCGGTTAGCGCAGAATCGGAGGAAGCTCATCTGCAGCCATTGTGGGAAGTCTTTCACCCTCAAGGCCCTTCTGACCAACCACATACATTCCACCCACCTCCAGATATCCGACTCGGATTTCAAGATCTCTCGGAGGAGGGAGTTGAACTGGCAAGAGGGTGCATCCACCAAGAGACCAAAAGAGAAGCTGTTCATCTGCGATTGGTGCGAAATGGGTTTCCTCACTAAGAGCAGTCTCACGAAACACGTGGACTCGGTCCACTTGGGACTGAAGCCTTTCCGTTGCGACGTCTGCTCCAAAAGCTTCCAGTGGGCGTCCGAGCTCAAGTCCCACCAAATCATTGTGCACAACGTGGAGGTGCAGTTTGAGTGTCAGAAATGCAGGAAATTTTATAAGAACGCCGAAAGCCTGAGATCTCACCTGCAGTTGCACGTGGAGAATCGCCGTTTAAACTGCACCCTCTGCCCGAGGTCCTTCCTGCTCAAAGGCCAACTCAATTCCCACATGGAGGCACACAGAGGACTCAGGCACACCTGCGAGACTTGCGGGAAGGAGTTCAGGGAATCCTACCTGCTGCAGAGACATAGGCGGAGGCACATGAACGTGAGAGTGCACAAGTGCACGCATTGCTCCAAAGCATTCAAGGAAAGACAACAACTCAAGAAGCATTACGAGGTGCATTCAAAGCCACACGACAACGCTTGTGAGCTCTGCGGAAAGAATTTCTACTCGGTGAAGACCCTGAACAAGCACATGATGGTCAGTGGCGGACTTTGCCGTTTAGAGTGTGAGCTGTGCCACAAGAAGTTCTCCTGCCTTTCGACCCTGAAGAAGCACTTAACGTGGCATAAGGAAAAGAGCCACGAATGCCAAGAGTGCCACAGCAAGTTCAAGACGGAAGAAgagctaaggaatcacacggagagccaccacagctcagaggagaagctgttcaagtgtgcggagtgctcgaagacataccgatggaagcatcacctgaaaactcacgtcacagtgcacaccggagtgaagccttacctctgcagagtgtgctcgaagacgttcatatccaagagcaacctcaggactcacctcaagacccacgACAAAAAGCGGGAGGTGTTCTGTTGCGATAAGTGTCGAATGACTTCGACGAGCAAGTACTACATGAGGCAGCACATGAAGGATGTCCATGGCACTGGCGAGAGAGCCAAAGGAGAGGTAGAAGACAAGGCTTAA
Protein Sequence: MATCVCLEHSINFLPFLFLDQEAFHQASFSRLSSSPVVEEGSSGTVSNATITIGTSDDASRRQTLTARSGPSTIAGVCLGLSSGGHQVLSKRFLCDVCGASFTCKPLLCTHIRDRHSWNVTTGPCGVGGHCQGKEDDPNFPCPDHGGDIFEYHQTFRLAQNRRKLICSHCGKSFTLKALLTNHIHSTHLQISDSDFKISRRRELNWQEGASTKRPKEKLFICDWCEMGFLTKSSLTKHVDSVHLGLKPFRCDVCSKSFQWASELKSHQIIVHNVEVQFECQKCRKFYKNAESLRSHLQLHVENRRLNCTLCPRSFLLKGQLNSHMEAHRGLRHTCETCGKEFRESYLLQRHRRRHMNVRVHKCTHCSKAFKERQQLKKHYEVHSKPHDNACELCGKNFYSVKTLNKHMMVSGGLCRLECELCHKKFSCLSTLKKHLTWHKEKSHECQECHSKFKTEEELRNHTESHHSSEEKLFKCAECSKTYRWKHHLKTHVTVHTGVKPYLCRVCSKTFISKSNLRTHLKTHDKKREVFCCDKCRMTSTSKYYMRQHMKDVHGTGERAKGEVEDKA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01212820;
90% Identity: iTF_01212820;
80% Identity: -