Ppen079654.1
Basic Information
- Insect
- Platycnemis pennipes
- Gene Symbol
- -
- Assembly
- GCA_933228905.1
- Location
- CAKOGJ010001677.1:41252-62724[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.31 2.2e+02 5.5 0.5 3 21 114 132 112 133 0.93 2 13 0.092 65 7.2 4.3 1 17 170 186 170 199 0.89 3 13 7.5e-05 0.053 16.9 3.4 1 23 205 228 205 228 0.94 4 13 1.4e-05 0.0098 19.2 3.1 1 23 234 256 234 256 0.99 5 13 0.0037 2.7 11.6 0.1 1 23 262 284 262 284 0.97 6 13 5.5e-06 0.0039 20.5 2.0 1 23 289 311 289 311 0.98 7 13 3.3e-06 0.0024 21.2 1.0 1 23 317 339 317 339 0.97 8 13 5e-07 0.00036 23.7 2.8 1 23 345 367 345 367 0.97 9 13 1.7e-05 0.012 18.9 0.9 1 23 373 395 373 395 0.98 10 13 0.00023 0.17 15.3 7.6 1 23 400 422 400 422 0.98 11 13 5.4e-07 0.00038 23.7 3.0 1 23 430 452 430 452 0.99 12 13 0.027 19 8.8 0.1 1 18 458 475 458 475 0.92 13 13 0.00088 0.63 13.5 2.2 1 23 487 510 487 510 0.95
Sequence Information
- Coding Sequence
- ATGAGAGGCCCTTGCTTAGCAAATATGTTTCGCTCGGGGAAAGAGGGGTTGAAGAAAGATTTACAACTACTTGTTCAGCGGTCTCTGTGGAAGTTTGACTGGGAGGGGGCGAATGGTCATTGTTTTGTGGGATGTGGTGAGGGAAAACCCGGGTCGGGGCAGGGGGAGTGGACTCCAGCCGTAGAAGGGACACCAGGCCAAGAAGCCTCCTTCCTCCAAAATTCGCTATCAAGACTCGCACCAGGTGCTGTCATGCAGGAGAAGGAATCAGTTTCAAACACTGCGACCACTGCTGGCTTGAGTGACACTCCAAGGACGCAGACGGGAAAATTGTTAGCGTGTTTGGAATGCAAGGCCTCCTTCAGCTGCAAGGCCTCTCTGTTCACCCACGTCAGGGGTGACTGCAGCGGGAACTCGGGTACAGGTCGTGGTGTCTCATCAGAACATGGTGACCTAAGAAGGGCGTTCTCATTGGCCGTGCATCAGAAGGAGAAGAAGGATAAACGGTTCGTCTGTGATCACTGCGGTAAGAGTTACACCGGGAAACGTAGTTACACCGCAAAACGTCTATTGTGGGAACACATCCACGTGGTCCACTTGCAACTGAAACCTTTCAGTTGCAGCATCTGCTCCAGGAAATTCGCGAGGAAGCATCACCTGGAGTCTCACGTGAACGATGTGCATATTGGGAGGAGGCGCTTCAAGTGTGAGACCTGTGGAAAGTCCTACAAGTCAGCCTGTGGCTTCAGGGGTCACATGCGGATGCACTTGGAGACGCGCCCTTACCCCTGTGCCCTCTGCCCAAAGTCCTTCCTGCTCGCGTCCAAACTCAAAGACCACATGGAGGAGCACAATGGACGCAGGTACACCTGCGAGGTTTGTGGGAAGGAGTGCAAGCAGGCAGGCGAACTGCACCGACACATGTATGTACACACGGAGGAGAGGCCGCATCAATGTGATCAATGCCCGAAAGCATTCAAGACACGTGGGGACCTCACAGCGCATTCCAAGATACACTCAAGCATACCCAAATACCCTTGCAATATTTGCGGGAAGAAGTTCACGCGGAGACATTACTTGAAGGTCCACATTACGAACCACGAGGGGAAGAGACCTTTTGAGTGCGATCTGTGCCACAGGAAGTTTGTAACCAAACCAGACCTGAGAGCCCACGTGATCCGGCACGGGGAGAGGGGTCACGAGTGCCAGCAATGCCACAAACGGTACCATTCGAACTCGGACCTGATGAAGCACATGGAGACCCACGGCACAATGATGGCCAGGCCGTTCCAGTGCGACGAATGTTCAAAGACATTCCGGCACAAGACCAGTCTGGAGGAGCACATCATGACACACACGGGACTGAGACCGTTCGCTTGCGGTGTGTGCCCCAAGGTGTTCAACGCCAGGAGTAGCCTGCAGAAGGACGCCAAGGTGCACGACAAGGAGCGGGAGGTGTTCAGGTGCAAGGAATGCAACATGACCATGTTTTCCAAATATAACCTGAAGAGGCACGTGGAGAAGGTCCACGGCAAAGACAAGGCGGTTTGGTTTTTTCAGACTCGGCAGACCGGTTCAGATTTAGGGAAAAAACCGGTGCACCTGGGCGTCGGTTCTGAACCGGTGCACCGGGGAAGCGGTTCCGAAACACCGATGATCGTTCGCTCCTCGGCTTTCACGCCGCTGTCTCTGCTCGCAGCCAGGATGGCTGACGACCACGCCTGTGAACTTTCCTGTGCTTCACAAGCCGACCAACCTAATATTCGCGTGAATATTTACGCCGAGTCTGTTTCTGCCTCCGCGCAACCTCAAATAGTAGAAACTGAGGAGAATGCATCTCGCCCCGAGATGCAGCGGGAAAACTCACCCACAACGGAGGTTCATCAACAACGAGTGCAAGATTCTCAGGATTCTCGTCGTCCAAGTCATCACTCTGATCATCCGACGAATGCTGAAAGGAGTACTACGAGCACGTCAAGTATGCCGCAAAACAACGCTGTTGTCGACACCTATCACACAGTTATCAACAAGCGACGACGAAAGAAGCCCATCACCGGCTCAGCGGATTCGTCCGACGACTTGATCGTCGGCATACCGAAAAAGGTACATTTACACGTGTCGCGTTTCAAGAAAGGCATCACTACCGATGATCTTCGCGAAAAACGCGCTGCGAGGAGCGTCACTTGCGGCGAAATCAGGGAACCATTACGAAGCACCCGAGGAGCGACGAGGGAGGGGAGGGTGAAGAAGATATGCCGCTGGCGGGGAAGGGCCATGCTGCTGGAGGCGTTTAAGGGGAGGGACGAACGAAAGACAAATGTCGAGGGGCGTCCTAAAACGCTACGTGGCCCCCTCCCCTCATCGCTCACCCCTACCCTCATCGCTCACCCCTACCCTCATCGCTCACCCCACCCCTACCCGCTCTTCCCCCCTCCTAAGCGCTGCCACTCGCTCTCAGGCTGA
- Protein Sequence
- MRGPCLANMFRSGKEGLKKDLQLLVQRSLWKFDWEGANGHCFVGCGEGKPGSGQGEWTPAVEGTPGQEASFLQNSLSRLAPGAVMQEKESVSNTATTAGLSDTPRTQTGKLLACLECKASFSCKASLFTHVRGDCSGNSGTGRGVSSEHGDLRRAFSLAVHQKEKKDKRFVCDHCGKSYTGKRSYTAKRLLWEHIHVVHLQLKPFSCSICSRKFARKHHLESHVNDVHIGRRRFKCETCGKSYKSACGFRGHMRMHLETRPYPCALCPKSFLLASKLKDHMEEHNGRRYTCEVCGKECKQAGELHRHMYVHTEERPHQCDQCPKAFKTRGDLTAHSKIHSSIPKYPCNICGKKFTRRHYLKVHITNHEGKRPFECDLCHRKFVTKPDLRAHVIRHGERGHECQQCHKRYHSNSDLMKHMETHGTMMARPFQCDECSKTFRHKTSLEEHIMTHTGLRPFACGVCPKVFNARSSLQKDAKVHDKEREVFRCKECNMTMFSKYNLKRHVEKVHGKDKAVWFFQTRQTGSDLGKKPVHLGVGSEPVHRGSGSETPMIVRSSAFTPLSLLAARMADDHACELSCASQADQPNIRVNIYAESVSASAQPQIVETEENASRPEMQRENSPTTEVHQQRVQDSQDSRRPSHHSDHPTNAERSTTSTSSMPQNNAVVDTYHTVINKRRRKKPITGSADSSDDLIVGIPKKVHLHVSRFKKGITTDDLREKRAARSVTCGEIREPLRSTRGATREGRVKKICRWRGRAMLLEAFKGRDERKTNVEGRPKTLRGPLPSSLTPTLIAHPYPHRSPHPYPLFPPPKRCHSLSG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -