Ppen091650.1
Basic Information
- Insect
- Platycnemis pennipes
- Gene Symbol
- -
- Assembly
- GCA_933228905.1
- Location
- CAKOGJ010002143.1:448397-449794[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.012 8.6 10.0 0.8 2 23 2 23 1 23 0.96 2 13 3.7e-05 0.027 17.9 1.0 1 23 74 97 74 97 0.97 3 13 0.075 53 7.5 0.2 1 21 123 143 123 146 0.85 4 13 1.4e-05 0.0099 19.2 0.4 3 23 154 175 152 175 0.97 5 13 1.8e-07 0.00013 25.1 0.1 1 23 181 203 181 203 0.98 6 13 0.0012 0.89 13.1 1.6 1 23 209 231 209 231 0.98 7 13 0.0001 0.074 16.5 1.8 1 23 236 258 236 258 0.98 8 13 0.00011 0.075 16.4 2.7 1 23 264 286 264 286 0.92 9 13 9.5e-07 0.00068 22.9 2.6 1 23 292 314 292 314 0.97 10 13 0.00073 0.52 13.8 5.2 1 23 322 344 322 344 0.97 11 13 3.1e-05 0.022 18.1 1.1 1 23 349 371 349 371 0.97 12 13 0.00034 0.24 14.8 0.7 1 23 380 402 380 402 0.98 13 13 2.6e-05 0.018 18.4 1.5 1 23 408 431 408 431 0.96
Sequence Information
- Coding Sequence
- ATGGTTTGCGATGAGTGCGGGGATTCCTTCGAATGCAAGAGTTCCCTGTTGACCCACATTAGCAGTCACCTCGGGGAGAGCAACACTACAGGTCCTGATAAAGTTGGAGCGCAGAGTGTGGGGGATGAGGTTGGAACCAATGTCTCCTCCCTTCATTGTGAAGATACCTTTGCCTTGTGTGGTGGTGTGGGCTATCACATGAGAAATAAGCGCGTGGAGTTTGTGTGCGACCATTGCGGGAATGCTTGTGCCCAGAAGGCCAAACTGATTAGCCACATACGTTCCGTCCACTTAAAGGTATCTGACTCGGAGTGCAAGAGGCAAAGAACGTTCACCAAAAGCAGCAAGGGGAAGAGAGAGAAGCGGTTCGTTTGCAATCGCTGCGGTACGCGTTTCCTCACCGACTACAGTCTTTCGTTACACGTTGACGCGGTGCACTTCGGACTGAAGCCCTTTGGTTGTAACATCTGCTCAAAGAGTTTCGCGAGGAAGACGACTTTGAGGGGACACATACTGATGGTGCACATTGGAGAAAGGCATTTCGAGTGTGAGGAGTGCGGGAAAGCGTTCAAGGCTGCCAAAACACTGAAGGCTCACATGTTGACGCACCTGGAGAAGCGCCCGTACCCCTGCACCCTCTGCCCGAGATCCTTCCTGCGCGAGTGCATGCTCCGGTCTCACATGGACTCACACATCGGTCGCACGCACACCTGTCAGGTTTGCGCAAAGGAGTTCAGGGAGGGTTACCTGTTGAAAAACCACATGCGCATGCACTCGGAGGAGAGGCCGTACAAGTGCGACCAGTGCCCGAAGGCATTCAAGTCGAGGGTAACACTAAAATCCCATTGCCTGGTGCACTCGGGGCTGCGCAATCACTCTTGCGGTGTCTGCGGAAAGAAGTTCTCCACTACATATCAAGTAAAAATTCACATGAGGACCCATGATGGGTCCAGGAAGAGGATATTTGATTGTGAGGTGTGCCACGACAAGTTTACCACCATGGAACACCTAAAGAGGCACATGACTCGGCACAACGAGAGGAGCCACGAGTGTCTGCTCTGCGACAAACGGTTCAAGAGGGAGTTGGACCTGAGAGCGCACGTGGAGACCCACAGTTCGAAGACTGCCGAGAGACCTTTCAAGTGTGGCGAGTGCTCGAAGACCTTCCGCCTTAAGAAAATTCTGAGGGCACATGTCGCGACGCACAAAGGACTGAGACCGCACGTCTGTGAGTTGTGTCCCAAGGCGTACGTTTCCAAGTTCTACCTCCGTGTGCACATGAAGAACAAACATGAGAAGAAACAGGCGTTCAGGTGCGATGAGTGCCAGCTTGGAGATGGAGAGCAAGTGCCAACTGAAGAAGTACATATTGGTGGTCCACAGCAAAGAAAAGAATAA
- Protein Sequence
- MVCDECGDSFECKSSLLTHISSHLGESNTTGPDKVGAQSVGDEVGTNVSSLHCEDTFALCGGVGYHMRNKRVEFVCDHCGNACAQKAKLISHIRSVHLKVSDSECKRQRTFTKSSKGKREKRFVCNRCGTRFLTDYSLSLHVDAVHFGLKPFGCNICSKSFARKTTLRGHILMVHIGERHFECEECGKAFKAAKTLKAHMLTHLEKRPYPCTLCPRSFLRECMLRSHMDSHIGRTHTCQVCAKEFREGYLLKNHMRMHSEERPYKCDQCPKAFKSRVTLKSHCLVHSGLRNHSCGVCGKKFSTTYQVKIHMRTHDGSRKRIFDCEVCHDKFTTMEHLKRHMTRHNERSHECLLCDKRFKRELDLRAHVETHSSKTAERPFKCGECSKTFRLKKILRAHVATHKGLRPHVCELCPKAYVSKFYLRVHMKNKHEKKQAFRCDECQLGDGEQVPTEEVHIGGPQQRKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -