Basic Information

Insect: Platycnemis pennipes
Gene Symbol: -
Assembly: GCA_933228905.1
Location: CAKOGJ010010386.1:2159180-2160697[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.15 1e+02 6.5 1.7 2 22 33 53 32 53 0.93

2 14 1e-06 0.00074 22.7 2.0 1 23 103 126 103 126 0.97

3 14 1.2e-05 0.0084 19.4 0.1 2 20 161 179 160 180 0.94

4 14 7.6e-05 0.054 16.9 4.3 1 23 189 212 189 212 0.94

5 14 7.9e-07 0.00056 23.1 0.7 1 23 218 240 218 240 0.98

6 14 0.00051 0.36 14.3 0.6 1 23 246 268 246 268 0.96

7 14 6.6e-05 0.047 17.1 0.4 2 23 274 295 274 295 0.97

8 14 1.6e-06 0.0012 22.1 0.6 1 23 301 323 301 323 0.97

9 14 2.5e-07 0.00018 24.7 3.8 1 23 329 351 329 351 0.98

10 14 0.00083 0.59 13.6 1.4 1 23 357 379 357 379 0.97

11 14 8e-05 0.057 16.8 3.6 1 23 384 406 384 406 0.97

12 14 2.4e-06 0.0017 21.6 3.1 2 23 416 437 415 437 0.97

13 14 0.00012 0.085 16.3 1.8 1 23 443 465 443 466 0.91

14 14 0.0015 1.1 12.8 6.8 3 20 474 491 472 494 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.15	1e+02	6.5	1.7	2	22	33	53	32	53	0.93
2	14	1e-06	0.00074	22.7	2.0	1	23	103	126	103	126	0.97
3	14	1.2e-05	0.0084	19.4	0.1	2	20	161	179	160	180	0.94
4	14	7.6e-05	0.054	16.9	4.3	1	23	189	212	189	212	0.94
5	14	7.9e-07	0.00056	23.1	0.7	1	23	218	240	218	240	0.98
6	14	0.00051	0.36	14.3	0.6	1	23	246	268	246	268	0.96
7	14	6.6e-05	0.047	17.1	0.4	2	23	274	295	274	295	0.97
8	14	1.6e-06	0.0012	22.1	0.6	1	23	301	323	301	323	0.97
9	14	2.5e-07	0.00018	24.7	3.8	1	23	329	351	329	351	0.98
10	14	0.00083	0.59	13.6	1.4	1	23	357	379	357	379	0.97
11	14	8e-05	0.057	16.8	3.6	1	23	384	406	384	406	0.97
12	14	2.4e-06	0.0017	21.6	3.1	2	23	416	437	415	437	0.97
13	14	0.00012	0.085	16.3	1.8	1	23	443	465	443	466	0.91
14	14	0.0015	1.1	12.8	6.8	3	20	474	491	472	494	0.95

Sequence Information

Coding Sequence: ATGACTGATACTTTACGGAGGCGGATTCAGAGCAGAAGGAGAGGTGGGGGTGGGAGTCAGTCGTGTTATGGGCGACGTACGTTGAGGAAGAGGATAACTTGTCTCGAATGCGGAGCCACCTTTGCCTGCAAGTTCTCTCTGTCAACCCACATCTGTACTAACCAGAGAGGGAGGAGAGATTTGAATCCTGAAAGAAAGGGAGACCTGAATCAAAGAAATGAAGATGACACTACGTTTCTCCATCCCAATCACGAAGAGGTCTTTGGCATATGTGATGATCCTTATGTAAGAAAGAGACGCGAGGAGTTCATATGTGACCACTGCGGGAAGGTTTACACCCTGAGGGTCCACCTGATCAACCATATGCGCTCCGTTCACCTCAAGATATCCAAGTGCAAGGTCACAAGGAAGACGATCAGCTGCCAAAGGAACACGAGTGCCTTCGCCAAAAAACAGGAGCCGAAGGGGGTGAAGAAACTGATTTGCGATTACTGCGGTAAGGGTTTTCCGTCGAAGTCGAAACTACTAAGACATATTGTTCCGGTCCACTTGCGACCTAAGACTTTCTGTTGCAAAATCTGCTCCCATAACTTCACAAGGAAGTCTGAGCTGAAGGAACATATAGTCTCAGTGCACGTTCGCGAGAGGCGTCACAAGTGCGAGGAATGCGGCAAAGATTTCAAGAGTGCCGTTCTCCTGAAGGGTCATATGCTGACGCACCTTAAGCCACGACCGCACCCCTGCACCCTCTGCCCGCGATCATTCCTCTACAAGGGGGAGCTCAAGTCACATATGGCGTGGCACAGTGGGCGCAAGCCCACTTGTGAGGTATGCGGGAAGAAGTACTACAGTGCGAAGGGACTTCGCTACCACATGGTTAGGCACTCGGATGTGAGGCCGTTCCAGTGCAAGGAGTGTCCGAAATCATTCAAGACATACGGGGACCTCTGGACACATTCCCTGGTGCATTCTGACCTTCGAAGGCATACATGCAGTGTCTGCGGGAAGAAGTTCTCCCGGAGTTTATACCTCAACAGCCATATGAGGACCCATGACGGCAAGAGGCCTTTCGAATGCAAGATCTGCCACAACAATTTTGGTACCCAAGCGACCCTATATCAACACGTAGCCCGCCACGGTGAGAGGAACCACGAGTGTGAGCTGTGCCACAAATTGTTCAAGACGAAGAAAGACCTGAATGAGCACCTGTTGATCCACGGCCCGAAAAACGCCGAGAAGCGGTTGAAGTGTGCGGAGTGCTCGAAGACGTTCCACCGAAAGAGTAAATTGATTCGACACATGGCGACACACTCCGAGTTGAGGCCATACGTCTGTACGGTGTGCTCAATGGCGTTCAAGACGAAAGACTCCCTGAAGCAACACGACAAGGTACACCACCAGAAGCAGAAGGCGTTTGGGTGCAAGATCTGCCACAAACAGTTTTGCAGCAAGCCCAGCCTCCAACGTCACATGGCTTGCCACGGTGAGACGAGAAACGATTGTGAGCTGAGGAAGTAG
Protein Sequence: MTDTLRRRIQSRRRGGGGSQSCYGRRTLRKRITCLECGATFACKFSLSTHICTNQRGRRDLNPERKGDLNQRNEDDTTFLHPNHEEVFGICDDPYVRKRREEFICDHCGKVYTLRVHLINHMRSVHLKISKCKVTRKTISCQRNTSAFAKKQEPKGVKKLICDYCGKGFPSKSKLLRHIVPVHLRPKTFCCKICSHNFTRKSELKEHIVSVHVRERRHKCEECGKDFKSAVLLKGHMLTHLKPRPHPCTLCPRSFLYKGELKSHMAWHSGRKPTCEVCGKKYYSAKGLRYHMVRHSDVRPFQCKECPKSFKTYGDLWTHSLVHSDLRRHTCSVCGKKFSRSLYLNSHMRTHDGKRPFECKICHNNFGTQATLYQHVARHGERNHECELCHKLFKTKKDLNEHLLIHGPKNAEKRLKCAECSKTFHRKSKLIRHMATHSELRPYVCTVCSMAFKTKDSLKQHDKVHHQKQKAFGCKICHKQFCSKPSLQRHMACHGETRNDCELRK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -