Basic Information

Insect: Platycnemis pennipes
Gene Symbol: -
Assembly: GCA_933228905.1
Location: CAKOGJ010005541.1:48373-49959[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.037 26 8.4 0.2 1 23 79 101 79 101 0.96

2 13 7.4e-07 0.00053 23.2 0.6 1 21 145 165 145 166 0.96

3 13 9.3e-05 0.066 16.6 0.5 1 23 204 227 204 227 0.96

4 13 0.00045 0.32 14.4 0.4 5 23 237 256 235 256 0.90

5 13 2.1e-06 0.0015 21.8 0.3 1 23 262 284 262 284 0.99

6 13 0.0016 1.2 12.7 3.7 1 23 290 312 290 312 0.97

7 13 3.9e-06 0.0028 20.9 4.4 1 23 317 339 317 339 0.98

8 13 3.5e-05 0.025 18.0 0.7 1 23 345 367 345 367 0.97

9 13 4.7e-08 3.4e-05 27.0 0.4 1 23 373 395 373 395 0.98

10 13 1.2e-07 8.3e-05 25.7 3.9 1 23 401 423 401 423 0.99

11 13 1.1e-06 0.00078 22.7 3.1 1 23 429 451 429 451 0.99

12 13 3.2e-07 0.00023 24.4 3.0 1 23 457 479 457 479 0.97

13 13 5.3e-06 0.0038 20.5 2.2 1 23 485 507 485 507 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.037	26	8.4	0.2	1	23	79	101	79	101	0.96
2	13	7.4e-07	0.00053	23.2	0.6	1	21	145	165	145	166	0.96
3	13	9.3e-05	0.066	16.6	0.5	1	23	204	227	204	227	0.96
4	13	0.00045	0.32	14.4	0.4	5	23	237	256	235	256	0.90
5	13	2.1e-06	0.0015	21.8	0.3	1	23	262	284	262	284	0.99
6	13	0.0016	1.2	12.7	3.7	1	23	290	312	290	312	0.97
7	13	3.9e-06	0.0028	20.9	4.4	1	23	317	339	317	339	0.98
8	13	3.5e-05	0.025	18.0	0.7	1	23	345	367	345	367	0.97
9	13	4.7e-08	3.4e-05	27.0	0.4	1	23	373	395	373	395	0.98
10	13	1.2e-07	8.3e-05	25.7	3.9	1	23	401	423	401	423	0.99
11	13	1.1e-06	0.00078	22.7	3.1	1	23	429	451	429	451	0.99
12	13	3.2e-07	0.00023	24.4	3.0	1	23	457	479	457	479	0.97
13	13	5.3e-06	0.0038	20.5	2.2	1	23	485	507	485	507	0.99

Sequence Information

Coding Sequence: ATGCATCCGTTTACTCAAAAATATTTTCTAGGCCAAGATGCTGTGTCCAGTATAGCACCACAGATAGTCGTCACGGAAGAGTCGAATACCGTTTCAAACCCTGCTATTGTGTCTGGAGGGACGAATGTTTCGAGGAGGCCAACTGAACCTGCAGTGAGAGGATTAAGTCGAGGCAGGAGTAGAGGTTATGGTTGTAGTAGTTCCTGTTTTGGTCGGCGAAAAGTGAGTGAGAAATTCATTTGTGTGAATTGTGGGGCTTCCTTTTTCTCCAAGCTGATCCTGTCCACCCACATCAGGGCTCATCAGAGTAGGAAGGACACGTTTGCTGCCAATGGAGAAGGACAGGTTCAGGAGAATGTGCATAGCGACAACATTCCTCGTCCCATTAATGAAGAGGTGTTCGGCACGTGGTACGACTTGGGCCGTGAGGGGTTCATCTGCGATCACTGCGGGAAGGATTTCTCTCGAAAGGCCCAACTGATCAGTCACATACGTTTCGTCGACCTTACGGTATGTGTCGTGGAGAGCACTCCCCCAAGAAAGACATCTAGCAGCGAAAAAAGCCCCCGTATATTCACCAAAAAATCCAAGGAGAAGAGGGAGAAGACGTTCATTTGTGATCGCTGCGGTAAGGTATGCTTCTCGAAGCAAGCTCTCATCGTACACATCAATTCGGTCCACCTGGTTCTGAAGCCCTTCCATGGCAACATATGTTCCCAGAGCTTTTCAAGAAAGCACAGTCTAAAGAAGCACGTAATCGCAGTACACATTGGGGAGAGGCGTTTCAAATGTGAGGAATGCGGTTGGCCTTCCAAGACTGCCAATTACCTGAAAACTCACATGCTGACGCACTTGGAGAAGCGTCCTTTCCCCTGCACCCTCTGCCCGAGATCATTCCTGCTGAAGCACCACCTCAGGTCTCACATGGAGTCTCACAGTGGGCGAAATCATACCTGTGAGGTTTGTGGGAAACATTTCAAGGAGAAACTCCTACTTCAAAAACACATACGGACACACTCACAGGAGAGATTCTTCAAGTGTGAGCAGTGTTTGAAAGCTTTCAAGACTAATTGGGATCTCACACAGCATTCGCTGGTGCATTCGCGCCTGCGCAAGTATTCTTGTGGACTGTGCGGGAAAAAGTTCTCACGCAGTGGGGAATTGAGCAGTCATATGAGGATCCATGACCGAATGAGGCCGTATGAGTGTGAGCAATGCCACAAGAAGTTCTCCCGCAGTGGGAGCCTTAGCACACACATGAGGACCCATGACGGAGTGAGGCCGTATGAGTGTAAGCTGTGCCACAAGAAATTCACCCTGAGTGGGAACCTGAGCACTCACATGAGGATCCATGACGGAAAGAAGCCGTTTGATTGTGAGCTGTGCCACAAGAAGTTCTCCCGCAGTGGGGACTTGAGCAGTCACATGAGGACCCATGACGGAGTGAGGCCGTATGAGTGTCAGCTGTGCCACAAGAAGTTCGCCCGCAGTGGGACCCTGAGCGGACACTTGAGGACCCATGACGGATTGAGGCCGAATGGTACCTATTACTGTGCCACAAGAAGTTCACCCGGAGTGGGAACCTAA
Protein Sequence: MHPFTQKYFLGQDAVSSIAPQIVVTEESNTVSNPAIVSGGTNVSRRPTEPAVRGLSRGRSRGYGCSSSCFGRRKVSEKFICVNCGASFFSKLILSTHIRAHQSRKDTFAANGEGQVQENVHSDNIPRPINEEVFGTWYDLGREGFICDHCGKDFSRKAQLISHIRFVDLTVCVVESTPPRKTSSSEKSPRIFTKKSKEKREKTFICDRCGKVCFSKQALIVHINSVHLVLKPFHGNICSQSFSRKHSLKKHVIAVHIGERRFKCEECGWPSKTANYLKTHMLTHLEKRPFPCTLCPRSFLLKHHLRSHMESHSGRNHTCEVCGKHFKEKLLLQKHIRTHSQERFFKCEQCLKAFKTNWDLTQHSLVHSRLRKYSCGLCGKKFSRSGELSSHMRIHDRMRPYECEQCHKKFSRSGSLSTHMRTHDGVRPYECKLCHKKFTLSGNLSTHMRIHDGKKPFDCELCHKKFSRSGDLSSHMRTHDGVRPYECQLCHKKFARSGTLSGHLRTHDGLRPNGTYYCATRSSPGVGT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -