Basic Information

Insect: Platycnemis pennipes
Gene Symbol: -
Assembly: GCA_933228905.1
Location: CAKOGJ010005624.1:1-25301[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 8.8e-06 0.0063 19.8 0.6 3 23 233 253 231 253 0.98

2 11 7.7e-07 0.00055 23.2 0.8 1 23 259 281 259 281 0.98

3 11 4.6e-07 0.00033 23.9 2.9 1 23 287 310 287 310 0.98

4 11 2.2e-06 0.0016 21.7 0.0 1 23 318 341 318 341 0.98

5 11 0.00021 0.15 15.5 0.0 1 21 342 362 342 366 0.90

6 11 5e-06 0.0036 20.6 0.2 2 23 372 393 371 393 0.96

7 11 1.4e-05 0.0099 19.2 0.7 1 23 399 421 399 421 0.98

8 11 7.9e-07 0.00056 23.1 0.9 1 23 427 449 427 449 0.99

9 11 6e-07 0.00043 23.5 4.4 1 23 456 478 456 478 0.99

10 11 9.4e-06 0.0067 19.7 0.3 1 23 485 507 485 507 0.98

11 11 7.5e-08 5.4e-05 26.3 1.3 1 23 513 536 513 536 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	8.8e-06	0.0063	19.8	0.6	3	23	233	253	231	253	0.98
2	11	7.7e-07	0.00055	23.2	0.8	1	23	259	281	259	281	0.98
3	11	4.6e-07	0.00033	23.9	2.9	1	23	287	310	287	310	0.98
4	11	2.2e-06	0.0016	21.7	0.0	1	23	318	341	318	341	0.98
5	11	0.00021	0.15	15.5	0.0	1	21	342	362	342	366	0.90
6	11	5e-06	0.0036	20.6	0.2	2	23	372	393	371	393	0.96
7	11	1.4e-05	0.0099	19.2	0.7	1	23	399	421	399	421	0.98
8	11	7.9e-07	0.00056	23.1	0.9	1	23	427	449	427	449	0.99
9	11	6e-07	0.00043	23.5	4.4	1	23	456	478	456	478	0.99
10	11	9.4e-06	0.0067	19.7	0.3	1	23	485	507	485	507	0.98
11	11	7.5e-08	5.4e-05	26.3	1.3	1	23	513	536	513	536	0.96

Sequence Information

Coding Sequence: GTTAGTCGCTCTGACGGCTTCCCCCAGAGCGTGTGCACTTCGTGCCTGGACAAGCTGACGGAATTCAAGATGTTCAAGGACCAGTGCAAGGGCTCGATGGTGGCGTTTGAGAGCGGGTTCGACCCGGAGCGGTTTCACTTTGCCGATGCCCTCCACGCCGACTCGGGGTGGAGGAGCAGGGTGAAGGGGAGGGGACGACTGGCCTCAGGCTGGCTTCACTGTGGAGGAGGCAGCCTTGTTCTGGTTCTTTCTGGCTATAGCCTGCACGATTTGGTGAAAAGATTGGCGAAAGGTGCTCAAGGATATCCTGCTCATTGTGTCTTCTGCTACGGCGAAGCATGGCAGGAAGGTCGCGCGGCGATGGGCGAACTACGGGAGGTCAGGCCTAGTGGAAGTCGGGGTGGGGGAGGAATGGAGTGTCAGAGAGGGTCGGAGAAGGAAAGTGACCGAGGATTGACAGAGCACCACATTGCGTTCCACGCACATTACTTGGATGGCGGTGGGGACGGGGAGGATATGATCGGAAAACAGGACAACCAGGGCAAGGCGTTGGTGGGGAAGTCGTCGAGGGAGAGGCCGTTGACGTGGGGGGAGGACGTGTCGATAACAGGACGGGACGGCGTGGTGACGCTGGCcgagatggtggacgccacgggactgctgatgacgcagggcgacgatgccaagccgtttggttgcgggatttgcagcaagcggtttgcgcggagcaacaaactggtgcaacacatccgaacgcacacgggggaaaggccgttcgtgtgcgaggtgtgcggcagggcattcaaccgcaaggacaaactctccctccaccgcaaaacccacaacacagacaagccttaccagtgcccgacttgcggcaaggcattttgccgcagcgactacctCCTTCAGCACCGCAAGTCAAACCACCCGGAGGAGGAGATACCGCACTTCCCCTGCACGGAATGCGGTGCGGCATTTGCCAAGGAGAAGGACCTGACGGCACACATTCGCACGGCACACTTTTCCTGCGCAGATTGCGGGCGGATGTTCCCGACGGAGGCAGACCTTgcggcccacgcaacatcggtggagcactccggcgcgcacctagagtgcgtggattgcggtaaggtgtttgaggaccgggagaagcttcggaagcacggtaaggtacacaggcgcgatgcggcgtactcgtgcgagtggtgcggaaaggtgttctaccggatggacaagatgctccagcatcggcgcgtgcataccaaggagaggccgtaccgctgtgacctctgcgggaagggcttctcccgcagcgacaagatgacggagcaccggcgcatacacgacacgagcgtgaagccttacgagtgtccccagtgccacaagcggttcacgcgcagcgactacctcctccagcaccgcaagacgcacgtcgaggacgcgcgcaagttcaagtgcgagacctgtgacaagggctttgtgtcgaacaaggacctggttgtgcaccgcggcacgcactctctggaccgtcccttcaagtgcgaggactgcgggaagACGTTCAAGCGCAAGGGGGCGCTCAACTCTCACCGCAAGGGCACACACCCGACGGAACAGGGCGCGGAGATGCTCGATGCGGTGCAGTGGAAGGGTGATATACTGGGGACGTACTTGCAGGCTCCGTTCGCGTCTGTCTGA
Protein Sequence: VSRSDGFPQSVCTSCLDKLTEFKMFKDQCKGSMVAFESGFDPERFHFADALHADSGWRSRVKGRGRLASGWLHCGGGSLVLVLSGYSLHDLVKRLAKGAQGYPAHCVFCYGEAWQEGRAAMGELREVRPSGSRGGGGMECQRGSEKESDRGLTEHHIAFHAHYLDGGGDGEDMIGKQDNQGKALVGKSSRERPLTWGEDVSITGRDGVVTLAEMVDATGLLMTQGDDAKPFGCGICSKRFARSNKLVQHIRTHTGERPFVCEVCGRAFNRKDKLSLHRKTHNTDKPYQCPTCGKAFCRSDYLLQHRKSNHPEEEIPHFPCTECGAAFAKEKDLTAHIRTAHFSCADCGRMFPTEADLAAHATSVEHSGAHLECVDCGKVFEDREKLRKHGKVHRRDAAYSCEWCGKVFYRMDKMLQHRRVHTKERPYRCDLCGKGFSRSDKMTEHRRIHDTSVKPYECPQCHKRFTRSDYLLQHRKTHVEDARKFKCETCDKGFVSNKDLVVHRGTHSLDRPFKCEDCGKTFKRKGALNSHRKGTHPTEQGAEMLDAVQWKGDILGTYLQAPFASV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -