Ppen029632.1
Basic Information
- Insect
- Platycnemis pennipes
- Gene Symbol
- -
- Assembly
- GCA_933228905.1
- Location
- CAKOGJ010000488.1:64284-65762[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.026 3e+02 4.5 0.1 18 42 97 122 91 123 0.88 2 10 4.1e-07 0.0047 19.9 0.8 19 43 165 186 161 187 0.96 3 10 0.012 1.4e+02 5.6 1.1 16 40 253 274 243 276 0.74 4 10 0.0016 19 8.4 1.4 18 41 283 303 281 304 0.83 5 10 0.0041 48 7.1 0.9 18 41 311 331 308 332 0.80 6 10 0.037 4.3e+02 4.0 1.7 18 41 339 359 337 360 0.85 7 10 0.011 1.3e+02 5.7 1.0 18 39 367 385 366 389 0.77 8 10 0.034 3.9e+02 4.1 3.4 17 37 394 415 383 416 0.71 9 10 0.00057 6.6 9.8 0.3 18 41 423 443 422 444 0.91 10 10 0.00074 8.6 9.4 0.8 18 38 451 472 448 472 0.78
Sequence Information
- Coding Sequence
- ATGCTTAAGTGTCTAAAGAGATTCATTATAGCCTTTTATTTGATATTTTTTCTAGGCCAAGATACTGACTTCGAGCAGGATGACATAGCGAGATCCCTCATACCCCCATCAAGACAAGTCGTGGCGGAAGAGTCGGATACACTTTCAAACCCTGCAAGTGCATCTGGAGGGACAGATGCATCTAGGAGGCGACCTAAAATTTCAATGAGGGAATCGGTTTGTGGCAGGAGTAGAGGTCGGGGTGGTAGTCGTTCGTGTTTAGGTCAGCGAAAAGTGAGGGAGCAATTCATTTGTGTTGAATGTGGGGCTTCTTTCGTTTCCAAGCTGAATCTGTCGACCCACATAAGGGCTCACCTGAGCAGGAACGAGAACACGTGTGCCGCTAAGGGAGGAGGACTGGGTCAGGAGGATGATCCTGGCACCTACTTACCCCTCCCCAATTATGAAGAGTTGTCTGGCACTAGTCGTGACTTGGGGCTTCAGGGATTCCTCTGTGATCATTGTGGTAAGGAGTACTCTCGGAAGACCGAACTGATACGCCACATACGTTCCGTTCACCTTAAGGTGTGTGTCGTGGAGAGCACGGCCCCCAGGAAGACATTCAGCAGCCAAAAGAGCTCCCGTGCCTTCACCGAGAGATTCAGAGGAGAGATTGTTCACTCAGAGGGGGGATTGTTCAAATGTGAACGGTGTTTGAAAGCTTTCAAAACAAATGGAGAGCTCAGTCGACATTCGCTTGGTCATTCGCGTCTGCGCAAGTATTCTtgtggagtttgcggtaagaagttctcccagagttggcacctgagaggtcatatgaggacccatgacggaatgaggccatttgagtgtgagaaatgtcacaagaagttctccttgagtgcccacctgagcaggcacttgaggactcatgacggaaagaggccgtttgagtgtgagaaatgtcacaagaagttctcccagagtgggcacctaaaagatcatatgagaacccatgacggaatgaggccgtttgagtgtgagcaatgtcacaaaaagttctccctgaatgtgcaccttagaaggcacatgaggactcatgacggagtgaggccgtttgagtgtgacctgtgccacaagaagttctcccagagtgggcacctgagagatcatatgaggatccatgagggagtgacgccgtttgagtgtgggttgtgccacaaaaagttctccctgaatgggtacctgaccaggcacatgaagactcatgacggaatccggccgtttgaatgtgagctgtgccaaaagacgttctcccagagtgggaacctgagagatcatatgaggacccatgacggaaagaggccgtttgagtgtgagctgtgccagaagacattctcccgccgtgggcacctaagcagacacatgaggtcgcatgacggaatgaagccgttaagtgtgagctgtgcgagaaaaagttctaccgtagtgagcacctga
- Protein Sequence
- MLKCLKRFIIAFYLIFFLGQDTDFEQDDIARSLIPPSRQVVAEESDTLSNPASASGGTDASRRRPKISMRESVCGRSRGRGGSRSCLGQRKVREQFICVECGASFVSKLNLSTHIRAHLSRNENTCAAKGGGLGQEDDPGTYLPLPNYEELSGTSRDLGLQGFLCDHCGKEYSRKTELIRHIRSVHLKVCVVESTAPRKTFSSQKSSRAFTERFRGEIVHSEGGLFKCERCLKAFKTNGELSRHSLGHSRLRKYSCGVCGKKFSQSWHLRGHMRTHDGMRPFECEKCHKKFSLSAHLSRHLRTHDGKRPFECEKCHKKFSQSGHLKDHMRTHDGMRPFECEQCHKKFSLNVHLRRHMRTHDGVRPFECDLCHKKFSQSGHLRDHMRIHEGVTPFECGLCHKKFSLNGYLTRHMKTHDGIRPFECELCQKTFSQSGNLRDHMRTHDGKRPFECELCQKTFSRRGHLSRHMRSHDGMKPLSVSCARKSSTVVST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01212804;
- 90% Identity
- iTF_01212804;
- 80% Identity
- iTF_01212801;