Pros042918.1
Basic Information
- Insect
- Platycheirus rosarum
- Gene Symbol
- PRDM15_1
- Assembly
- GCA_963971375.1
- Location
- OZ020510.1:6444217-6462694[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.29 63 5.9 4.1 2 19 229 246 228 249 0.91 2 15 0.03 6.6 9.0 0.1 3 23 290 311 289 311 0.95 3 15 0.00014 0.031 16.3 2.9 1 23 317 339 317 339 0.98 4 15 0.042 9.4 8.5 4.8 1 23 345 367 345 368 0.95 5 15 9.3e-05 0.021 16.8 3.7 2 23 376 398 375 398 0.96 6 15 0.00044 0.097 14.7 0.1 1 23 445 467 445 467 0.97 7 15 0.002 0.44 12.7 1.7 1 23 472 494 472 494 0.99 8 15 3.1 6.9e+02 2.6 0.9 1 23 510 535 510 539 0.88 9 15 0.004 0.89 11.7 1.5 1 23 545 568 545 568 0.96 10 15 0.00076 0.17 14.0 0.8 2 23 574 596 574 596 0.96 11 15 0.00013 0.029 16.4 1.1 2 23 600 622 599 622 0.96 12 15 5.9e-05 0.013 17.5 1.3 1 23 628 651 628 651 0.95 13 15 0.001 0.23 13.6 1.6 1 23 657 679 657 679 0.98 14 15 0.00017 0.037 16.0 5.1 1 23 685 707 685 707 0.98 15 15 0.0024 0.53 12.4 0.1 1 23 713 738 713 738 0.96
Sequence Information
- Coding Sequence
- ATGAAATGTCTGCGTTGCAATATTCCATTATCCGACGACTATCAATTGATTTTTGATGAAACTGGCATTGAACTGCAACTGAACAAACTCCTGGCTGAACACTTCAAGATTTTTCTTATTAAAGACCTCAAAACAACTCAAGCCTTATGCAATGAGTGTCTTAACAAACTTATTGAACTCTACGATACCCAGAAGTTTAGCGAAGAAAACTCTGAATTGCCCAAAGAAAATGTCACAGAAACAAGCACAGTAGATGACGATATCGAAGAGAAAGAGCCACATGATATAATCGAGAAAATTGCAGACGAATCTGAGATTAATAGCTTCGAAGAGACCATTGAGGAACCCGTTGAAAAGTTTCCTGAATTCAAGAATGTTCAAGAAGAACCAGATTATACTGAAACCACAGTGGAAGGCCAGTTTTTCCAAGATTACTTGCAGAATGTCATCAAATCCGACTTGGAGCAGATATCTTTCGACCATGATTCTGTTTGTATCTGCACAGAATACATAAGCAATCATCAAGATCTGCTCACGCATGTGGAACAAAATCACGAAACTGAATCAATGCAATATCCTTGTGTGTTTTGCGATAAGGCGGAGATTAATTTTGAGTCAACTAGAAGTCTAGCTCATCATGTAGTCTTGAAACACTATGATTTGAATTCggttATCATCTATTGCATCTGTCCAGAGTGTAATACTAGGTTTTCATCGTTTCTAGAGTACAATAAGCATTCGTGTTATAAGCAGAGTTTCGCCAGCCGGTTGCAGCAGAAATGCAAAGAATGTTGCAAGGAGTTTAGTTCAAATAAAAGGTACCGCTTccatttacaatttcatttgaaGAAACAACGTCCCAAGGCTTGttttatctgtgatattttgttttccgATGAAAACGACTTTTTCGAACACATTATGTACGCGCATGAGAAGGAAGACGCATTTGTTTGCAAAACATGTGATCGAGTATGCACCACACAACAACTCTACGAAAATCATTTAAGACTACACAATGCCATTCGATCATTTCACTGCCCATATTGCACGAAGTCCTATCTCTataatcaaatgcttttgaatcATATTCAACAACATCACTCCGATGAACAGTCGAATAATAAATGCAAAATCTGCAAAAAAACTTTAGCCACCCGACACCTTCTAAAAAGACATATGCAACTTATGCATCTAGAGGAAACCGAAAGTGATGTTTTCCTATGCGCAGTGTGTGGACTAGTTGGGATGTCAAAAGAGGACATAAAGtATCACGTTGAAGAAGGCAAGTGCCAAGAAGCTGAGGTAAACAGTGAATGTTTGAGAATAGCGTATGCATGTGAATTTTGCGAACTGGCCTTCAACAGTGTGGACAATTTGAATCAACATAGGTTGATTCATGGCGATAAGGATTTCAAGTGCTGGATATGTGATAGCAAATACTCAGAGTTTAAAAAGTTGAAAACGCACATCCTTACGCACAATAATTACGAACCTCTTCAAAATTTGTTTCCAATTAACCGGCATTATGTGTGCAATATTAatGCATGCAAGCAGTCCTATCTAACATGGCCAACTTTGAGAGCTCACAAACTTAACAGCCACTTTAAGTCTCACGTCAATGATGAGGAATTTCGATGTCAATTTTGTTCGAAAGTATGTGTTTCACAGATGTCTTTGGCTGTGCATGTGGCACGAAAACACAACAACAaTTGCGCGGTGTGTCCCACTTGCAAAGCAACTTGCAGTTCGAAGGAGGCACTTCAGGAGCACATCGATACAAGGCATACGGAAATGGAATGCGAACATTGTGGCAAAACAACGAAGAACAAGCGCAATATGGACATCCACATCCTTATGGTCCACACTAAAGTTAAGAATTTCTTTTGCAAGATTTGCAACAAGGGGTACTTTTATAATAACGACCTCAAAACTCACATGAGAGCgGCTCACGCAGAaccaaacaaattcaaatgcaAAGACTGCAAATTCAGTACCAGCTATGAGGCATCCTACAATGTTCATATTCTCAAGCATTCCAAAACAAAACCCTTTAAATGCGAAGAATGTTCGAGGGAGTTTACACGAAAGTCTTGTTACAGATTGCATTTGCTAAGGCATTCCGACAATAAACCATTTGTTTGTACAGTTGAAGACTGTGGTCGCAGCTTTGTAATGAAAGGTATTTTAAATTCTCATCTAAAAAGCGCTCACCCAGACTatgaaatgaaatcaaaaagttCATCGGTACAAAAGAAAGTCCAACTAGATATGGAGGGTGCTAGTTCTTCTGACTGTGTGTTAACAGAAGTGTTGTCCGATAGTGAATTTCTAGAAGTGTATGACGAAGAAGGCGGCATTGTTTATGATGATGAATCAAATGCGGCAGAAGAAATCCTACCAGAATGTtctgaagaagatgaagaaatgTATATAgattaa
- Protein Sequence
- MKCLRCNIPLSDDYQLIFDETGIELQLNKLLAEHFKIFLIKDLKTTQALCNECLNKLIELYDTQKFSEENSELPKENVTETSTVDDDIEEKEPHDIIEKIADESEINSFEETIEEPVEKFPEFKNVQEEPDYTETTVEGQFFQDYLQNVIKSDLEQISFDHDSVCICTEYISNHQDLLTHVEQNHETESMQYPCVFCDKAEINFESTRSLAHHVVLKHYDLNSVIIYCICPECNTRFSSFLEYNKHSCYKQSFASRLQQKCKECCKEFSSNKRYRFHLQFHLKKQRPKACFICDILFSDENDFFEHIMYAHEKEDAFVCKTCDRVCTTQQLYENHLRLHNAIRSFHCPYCTKSYLYNQMLLNHIQQHHSDEQSNNKCKICKKTLATRHLLKRHMQLMHLEETESDVFLCAVCGLVGMSKEDIKYHVEEGKCQEAEVNSECLRIAYACEFCELAFNSVDNLNQHRLIHGDKDFKCWICDSKYSEFKKLKTHILTHNNYEPLQNLFPINRHYVCNINACKQSYLTWPTLRAHKLNSHFKSHVNDEEFRCQFCSKVCVSQMSLAVHVARKHNNNCAVCPTCKATCSSKEALQEHIDTRHTEMECEHCGKTTKNKRNMDIHILMVHTKVKNFFCKICNKGYFYNNDLKTHMRAAHAEPNKFKCKDCKFSTSYEASYNVHILKHSKTKPFKCEECSREFTRKSCYRLHLLRHSDNKPFVCTVEDCGRSFVMKGILNSHLKSAHPDYEMKSKSSSVQKKVQLDMEGASSSDCVLTEVLSDSEFLEVYDEEGGIVYDDESNAAEEILPECSEEDEEMYID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -