Pros043539.1
Basic Information
- Insect
- Platycheirus rosarum
- Gene Symbol
- -
- Assembly
- GCA_963971375.1
- Location
- OZ020510.1:18583355-18589330[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 4 8.9e+02 2.3 1.7 2 23 145 167 144 167 0.94 2 17 7.2 1.6e+03 1.4 0.1 6 23 177 194 177 194 0.96 3 17 0.0012 0.27 13.3 0.7 1 23 200 222 200 222 0.98 4 17 3.4e-05 0.0075 18.2 2.4 1 23 228 250 228 250 0.97 5 17 0.0042 0.93 11.6 1.0 2 23 259 281 258 281 0.91 6 17 0.00042 0.092 14.8 1.5 3 23 290 310 289 310 0.95 7 17 2.7e-05 0.0059 18.5 0.3 1 23 318 341 318 341 0.97 8 17 0.0056 1.2 11.2 2.7 1 23 348 371 348 371 0.93 9 17 0.017 3.8 9.7 0.2 1 13 377 389 377 394 0.87 10 17 7.8 1.7e+03 1.3 0.2 6 23 665 682 665 682 0.96 11 17 0.00075 0.17 14.0 0.6 1 23 688 710 688 710 0.99 12 17 4.4e-05 0.0098 17.9 4.7 1 23 716 738 716 738 0.98 13 17 0.001 0.23 13.6 1.3 1 23 744 767 744 767 0.91 14 17 0.00049 0.11 14.6 0.3 3 23 773 793 772 793 0.97 15 17 0.11 24 7.2 2.2 1 23 801 824 801 824 0.94 16 17 0.00042 0.092 14.8 0.4 2 23 832 854 831 854 0.94 17 17 0.11 24 7.2 0.2 1 16 860 875 860 876 0.87
Sequence Information
- Coding Sequence
- atGGACCCAGACATGAACTTTGATTCAAGTGACTGGAAAGACAGTCTGATCACAGATGTTAAGCTTGAAATTATTGAAGACTACAACGACCAGCAATTGGTATTCGATCAAAGTTTAGCTCTCGAAGATCCTCTCACAACAAAAGAAGAACCACTTCAAGTGGATGAAAATGTGGAGATTAAGCAAGATTCAGACAATGAGTCAGACATTCCAATTTCTCGGCTTTATGAACTAATTAAGGCCAATCCAGATAGCGAAAAACGTGCTAGAAAAAGAAGCTCATCAGCCAGACTTAAGACCAAACCAGACGTAAAAGTCGTTTTTCATATCAAAGACGGAGAATGGCTAGCATCATGTTATGGTGAGGAAACCACAGACAAACGAATAAACCCCGCAGAGTTCGACAAGTTCATCAAAAAGAACATGGAACTCTCGTGTGACTTGTGTCTTCAACATCTGGATAATTTCACAGATCTTCAAACACACTTTCAAAAAGAACACGGCGCAGAGAAGGCCTTTGTTACTTGTTGCACGAAAAAATTCTATCTTCGTGCACCGCTGGTCGATCACATTCTGCTGCATAGGCTGCCCAATTACTTCACATGTGTTTTATGCTCCAAAGTCCTAACAGGTCGTAAAACCCTCATCGAACATCAGAAAACGCACAACAAAAAACTCGTCTACCAATGCGATGGTTGCGACAAGagatttcatcgaaaaatcaatCTTGATCGACACAAAGATATCCATGTAGACTACTCTGAGCGTACAACTGAGTGTAGCTTCTGTACGAAGCTCTTTGCTTCAAAATTCTCACTTAAGCAGCACATCTACGATGTACATAGAACCGAAACTACTATTAGAATTTGTGAATTGTGCGGAAAAGTTTGCCGCGATCAACCGACTTTTCGACGTCATCAATACGAACATACAAATCAAGAAAAAGAATCTTTCCCATGTGAGATATGTGGCACAAGGCTTGCAACCAAAGATGGTCTAAGACGTCATCGGAAGTCACAACACCCAGCAGATAAAAAGCGATACTTTTGTAACTATTGTGGCATGGAGTCGACAACCGCTCATGCATTGCATCGCCATGTTACTTATATGCATACGGTGGAGCCTCGATATAAGTGCACGATGTGCAGTAAAGCCTTCAAGAGAGCTCTCAGACTTAAGGCTTCAAAGGGCGGATTGCTCtacgaagaagtattgcatccgccgcTTACGGCTGCCCTATGTGATGAAATCCAAAGCAATCTATATAGTCACGGACTAAAGCTTGCCCTCGGAGaactcgatgagggaagaCCAAATCAAGAAGATATCAACACCGAGTTAATTTGCTCGTCATGTTGGATACCAGTTGATTCATTTCACAAATTCTATGAAGTGACAAAAGAAGCCCACAAGTCATTCCATGCAATGAAACCAATCGTTGCAGAAAATATTGTTCCAGTGGAACATACAAATAATAATCACGGTTTTAATGATAATAACATCTTTATGGATCAAGACATAAAAGTTGAAGATAATGATTCGATTAATGGACCACTCGAGATGCAACAGCTTATAAATCCTCTAGACATATCGATCAAAAGTGATGAAGGAAGCATTGGCATAAAGTCCGATTCAGATTCTGAAATTCCATTGTCTGAGTTATCCAAACAAATCCAAAGGAAACGTAAAACCTCCAAGAAAAGTCATACAAGAGCTAAGCATCTTCACAAGAATGAATCGCATTTGAAAGAAAGCAATGCGATAGTCGAGGGTAACGAAGGTAAACTACACATTCAAGAAGGCAAGTGGCTGGCCACTAGCTACGCAGAAGAAACTTATCAAAAACCAATATCCGGCGAAGAGCTGGACAAATTCATCAAACAGAACTATGAGCTTCTATGTGGAGTTTGTCAAAAACCCTTGAACGAGTTTGCACAACTTCATCcccatttctgcaaatttcatGACAAATCAAAACCCTTTGTCACTTGTTGTGGCAGGAAACTCAAGTATCGTGCTCATATAGTCGATCATGTTTTGGTGCATCAAATACCGGAATACTTTAAGTGTCTGGAATGTTCAAAAGTATGGCCATCACGTCGAAATCTAAAGGAACATTTACAAACCCACAACAAGACTTTCATGTACCATTGTGATAAATGTACAAAAAGTTTTTGCACTAAGATTGCTCTTGAACGTCACCAGGAAATTCATTTGGTCGAACGGCCATTCAAATGCGACGAATGTGATAAATTTTATGCCACTGAATATCGACTTAAACAACACGCTTATAATATGCATTACTATAAGAAAATTTGTGAACAATGTGGCCAAATATTTCGGGAGAAGGCAACTTTTGTGCGACATCTATTGAAACACACAAATCAACCAAATCCATTTTTCGAATGCGAATTATGCGGAGCAAGACTTTCGAGCAAAAAAATCCTACAAAAACATCATAAGTTTCAGCATCAGGAGGATTCAATAGAACAAAGCTGTAATGAGTGTGGGATCAAAGTGAAAAGCTTGCAGGCACTTAAACGCCATATGAATTTTGTTCACAAATATCAACGAGAACACAAGTGCACAATGTGTGCCAAAGCCTTTAAAAGAGCTCTCACACTTAAGTGTTTCCCGAACAATCTGTTTGGTTCCTTCATCGAATAA
- Protein Sequence
- MDPDMNFDSSDWKDSLITDVKLEIIEDYNDQQLVFDQSLALEDPLTTKEEPLQVDENVEIKQDSDNESDIPISRLYELIKANPDSEKRARKRSSSARLKTKPDVKVVFHIKDGEWLASCYGEETTDKRINPAEFDKFIKKNMELSCDLCLQHLDNFTDLQTHFQKEHGAEKAFVTCCTKKFYLRAPLVDHILLHRLPNYFTCVLCSKVLTGRKTLIEHQKTHNKKLVYQCDGCDKRFHRKINLDRHKDIHVDYSERTTECSFCTKLFASKFSLKQHIYDVHRTETTIRICELCGKVCRDQPTFRRHQYEHTNQEKESFPCEICGTRLATKDGLRRHRKSQHPADKKRYFCNYCGMESTTAHALHRHVTYMHTVEPRYKCTMCSKAFKRALRLKASKGGLLYEEVLHPPLTAALCDEIQSNLYSHGLKLALGELDEGRPNQEDINTELICSSCWIPVDSFHKFYEVTKEAHKSFHAMKPIVAENIVPVEHTNNNHGFNDNNIFMDQDIKVEDNDSINGPLEMQQLINPLDISIKSDEGSIGIKSDSDSEIPLSELSKQIQRKRKTSKKSHTRAKHLHKNESHLKESNAIVEGNEGKLHIQEGKWLATSYAEETYQKPISGEELDKFIKQNYELLCGVCQKPLNEFAQLHPHFCKFHDKSKPFVTCCGRKLKYRAHIVDHVLVHQIPEYFKCLECSKVWPSRRNLKEHLQTHNKTFMYHCDKCTKSFCTKIALERHQEIHLVERPFKCDECDKFYATEYRLKQHAYNMHYYKKICEQCGQIFREKATFVRHLLKHTNQPNPFFECELCGARLSSKKILQKHHKFQHQEDSIEQSCNECGIKVKSLQALKRHMNFVHKYQREHKCTMCAKAFKRALTLKCFPNNLFGSFIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -