Basic Information

Insect: Platycheirus rosarum
Gene Symbol: -
Assembly: GCA_963971375.1
Location: OZ020508.1:3446078-3454930[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 9 2e+03 1.1 0.1 1 16 47 62 47 64 0.73

2 10 1.9e-05 0.0043 19.0 4.1 1 23 212 234 212 234 0.98

3 10 0.079 18 7.6 3.0 1 23 239 261 239 261 0.97

4 10 1.1e-06 0.00024 22.9 0.3 1 23 268 291 268 291 0.96

5 10 2.4e-05 0.0053 18.7 0.5 1 23 297 319 297 319 0.98

6 10 3e-06 0.00068 21.5 3.8 1 23 325 347 325 347 0.99

7 10 0.00043 0.096 14.7 3.2 1 23 399 421 399 421 0.97

8 10 4.6e-07 0.0001 24.1 3.7 1 23 427 449 427 449 0.98

9 10 2.3e-06 0.00052 21.9 0.7 1 23 455 477 455 477 0.98

10 10 1.6e-05 0.0035 19.3 2.9 1 23 483 505 483 505 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	9	2e+03	1.1	0.1	1	16	47	62	47	64	0.73
2	10	1.9e-05	0.0043	19.0	4.1	1	23	212	234	212	234	0.98
3	10	0.079	18	7.6	3.0	1	23	239	261	239	261	0.97
4	10	1.1e-06	0.00024	22.9	0.3	1	23	268	291	268	291	0.96
5	10	2.4e-05	0.0053	18.7	0.5	1	23	297	319	297	319	0.98
6	10	3e-06	0.00068	21.5	3.8	1	23	325	347	325	347	0.99
7	10	0.00043	0.096	14.7	3.2	1	23	399	421	399	421	0.97
8	10	4.6e-07	0.0001	24.1	3.7	1	23	427	449	427	449	0.98
9	10	2.3e-06	0.00052	21.9	0.7	1	23	455	477	455	477	0.98
10	10	1.6e-05	0.0035	19.3	2.9	1	23	483	505	483	505	0.98

Sequence Information

Coding Sequence: ATGACGCTGGAAATCTGTCGTATTTGTGGGTCAAATGGAgatctgaaaaatatttttagcgAGGGAAATGATGAACTTTTAGAGCAGATCCGACTATGCGCCAACATCCAAATAGACATCTATGATTGTTTGCCAAAGTTTATTTGTAACGAATGTGAAGAAGGATTGGCTTTTTCTTATCGTCTACGTAAACGCggagaagaaaccgaaaagaagCTACGCCAAGATATTTTCCTTACCAGTATTGAACCCTATTCGATGGGTGATGAGAATATCATTACAAGTGTTGACAGTGATTTGATGGAAGAATTTTGTGATGAAGAGTTGTGGATTAAAGATGAAGGCTCTTTGCAGTTTAATGAAGACGAAGTTTTCATTGATAGAGTATCAGAGTCAAATGAAGATATTCTTCAGAATTTGGAGGAAGTAGCTGATGAAAAGGATGAATATTGGGAGAATTTAGAGAACTTGGAAAGTGAATCTTATAGTGAAACAGGAGACATTGGAGATACTGCAGACAGTGGAGACATTATAGAAACCATCATTGAGCCGGTTGGAATCTTTAAAGTTGCAGTTGAGTCAACGCCGAGCGAAGGAGAGACTACACCGGTCTTCGAACCCACCCAAGAGGAATTTGAATGTGAAATCTGCAGTgagatttttaaaaagaaataccaTTATTCACAGCACATGAAAACACacgaaaaaaaacgtttccatTGTCCAGTTTGCGAAAAATGGTTCACTTTTAGATATCGGTATGAAGAGCACCTGAAGAATCATTTGTCTAGCGAGCGAGCTTTTCCGTGTCCTCAATGTCATAGGAGTTATACAAATGCTGGCAATATGGAGCGCCACATTCGTGCCGCCCATAAACAAGAGAGGAATTTCCAATGCCCTGAATGTAAGGATAGTTTCTCCCGGTCCGATGTATTAAAAATGCACATGGCAAAACACACTGAACACAGGACATATGAGTGTGAAGTGTGCCAAAAGAAATTCAAAACCAATCAAAGCCTGCATTATCACATGAGAATTCATGAAAACAAACTGGAAAGACCTAAGAAACCGGTTCGACTCAAAGCCAAACCTAAGCAAAAAATGCAAAGCTATCTGTGTGAAATGTGCAACAAGATCTCTCACCATCGAACAACGCATCTGAATCACATAAGAACTCATACAGGTGAAAAGCCATTCAAATGTAGCACCTGTGGTAAAGCATTCCGGACAACACATGCAAGGAGCAATCATCAGCTCCTGCATACCGACACACGGCCACATCAGTGCAAAATCTGCGGGACAGCATTTAGGCAAACTTCGCACTTAAAGTCACATATGCTAATTCATTCCGGAGACAAACGTCATGTCTGTGAAGTGTGTACTAAAGCTTTCACATTACGAAGCAACTTGGTGGTCCACCTGCGAATGCACACGGGAGAGAAGCCTTATACGTGCAAAAAGTGTCCAAAGAAATTTATTCTTTCTAGTCAATTCAAGAGACACGAAATGAGCCACAGAACCGAAGATGATGTTCAAACGGAATCCAGCAAAGAGAATGTAATTGTTTCGCAAATGAACTTGTATATTGATGACATTATAGAAGAAAATTCGAACGATATTGATAATATCATTGTTGtatcttaa
Protein Sequence: MTLEICRICGSNGDLKNIFSEGNDELLEQIRLCANIQIDIYDCLPKFICNECEEGLAFSYRLRKRGEETEKKLRQDIFLTSIEPYSMGDENIITSVDSDLMEEFCDEELWIKDEGSLQFNEDEVFIDRVSESNEDILQNLEEVADEKDEYWENLENLESESYSETGDIGDTADSGDIIETIIEPVGIFKVAVESTPSEGETTPVFEPTQEEFECEICSEIFKKKYHYSQHMKTHEKKRFHCPVCEKWFTFRYRYEEHLKNHLSSERAFPCPQCHRSYTNAGNMERHIRAAHKQERNFQCPECKDSFSRSDVLKMHMAKHTEHRTYECEVCQKKFKTNQSLHYHMRIHENKLERPKKPVRLKAKPKQKMQSYLCEMCNKISHHRTTHLNHIRTHTGEKPFKCSTCGKAFRTTHARSNHQLLHTDTRPHQCKICGTAFRQTSHLKSHMLIHSGDKRHVCEVCTKAFTLRSNLVVHLRMHTGEKPYTCKKCPKKFILSSQFKRHEMSHRTEDDVQTESSKENVIVSQMNLYIDDIIEENSNDIDNIIVVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -