Pros050091.1
Basic Information
- Insect
- Platycheirus rosarum
- Gene Symbol
- -
- Assembly
- GCA_963971375.1
- Location
- OZ020510.1:112234006-112239894[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.002 0.45 12.6 0.1 2 23 42 63 41 63 0.97 2 17 0.0018 0.4 12.8 4.7 1 23 69 92 69 92 0.91 3 17 0.00066 0.15 14.2 0.7 3 23 97 118 95 118 0.94 4 17 0.028 6.3 9.0 0.2 2 21 127 146 126 147 0.92 5 17 0.0001 0.023 16.7 1.5 1 23 155 177 155 177 0.98 6 17 0.0001 0.023 16.7 2.2 1 23 183 205 183 205 0.97 7 17 0.00029 0.064 15.3 2.6 1 23 211 233 211 233 0.95 8 17 4.6 1e+03 2.1 5.5 3 22 241 260 239 260 0.92 9 17 0.02 4.4 9.5 2.8 1 23 539 562 539 562 0.98 10 17 0.2 44 6.4 0.5 2 23 587 608 586 608 0.94 11 17 0.041 9 8.5 1.2 1 23 616 640 616 640 0.93 12 17 0.00013 0.028 16.4 1.5 1 23 644 666 644 666 0.98 13 17 0.0023 0.5 12.5 0.2 2 21 678 697 677 698 0.92 14 17 0.00063 0.14 14.2 0.5 1 23 706 728 706 728 0.94 15 17 3.8e-06 0.00085 21.2 1.8 1 23 734 757 734 757 0.98 16 17 3.4e-05 0.0076 18.2 0.1 1 23 763 785 763 785 0.98 17 17 0.0033 0.74 11.9 0.8 1 21 791 811 791 812 0.94
Sequence Information
- Coding Sequence
- ATGCCCATTGCCTTCCGATTTCCTAAGGACGCTAAAGTAATGGCAATGATTATATTACCCGATCCCAGCCTACCCTCAACAATGATGGTGCAAATAACAACCGACAAATCGGGTCCCAAACTAGTTTGTCCAATATGCAATAAAGCTCTTATATCGCTCAATGGTTATGTGAAACATCTGAAGAAACACGAACCGCCTGGTGGTTACATCTGTAACTATTGTGACGAACGATTTTGTTTGGAAGATCATCTGAAGAAACACAAAGATGAGAAACACAAAGTTCTGGCATGTCAGATATGCCATCAAACATTTGACTCTGCCCAAGACTACCGCACCCACATTAAGGACATTCACCAAGGCATAGATCGACGAAtgataaaatgtgaaaaatgtaGTATGGAATTCAAAACTGCTCAAGCCGCCAAAAGGCACACAGAAACTAAATGCGGTCAAATTAAGCCACACCAATGTGATCAATGTGAAATAGCATTTTATACAAAGTATAATTTAGCGGAACATAAAAAGATACATAGTGGAGAGAAGAAGTTTTGCTGCAGCTATTGTGGGAAGAGTTTTATGAGCAATGGACGGTTAGTGATACACGAAAGGAGTCATACGGGTGAAAAGCCGTATAAGTgtgatGTTTGTGGTAAATGCTTTGCACATAGAGAAAGCATCGTCACTCACTCCTCAATACATACCGGAGTCAAGTTGGTTGTTTGTAAATGCTGTGGATCACGTTTTTCCTGCCATTCAAATCTCATAAAACACAGACGGACCAGGCCGGACACTTGTGGTCTACCAatttataattccactaaaGAAACAAAACGAAATGGAAACTCAAGAATTCCTCCTGGTTTGATGTCGTCTGAGATAAGAATTGTTAGAGCCAGTAAAGTTATAAACCCTAAtgatgaacaaaagaaaaacaaggtcACCAGTAAcaccgaagaaaaaaaaacgaaaattaccaATCCCAGTAAAGATCAAGAGAATCCTAAAATCTCCAAGCCTAGAGCAAAGCCCAAAAAGCGCAAATTTGACTCAGAAGATGAAGAAGTTATCATTTCGAGACCACGAAGAAGTCTTCGTACTAAAGAATACGTTCCTACTGAAATACACACAAGTGAACCACCAGAATCACCTCCTAAGGACTTTGATTCTGATAACTATTGCGATGATCCTCTATTTGATAGTCCAATACATGATGATTCCTCTGACAGTGAAAACACAGATGTAAAACCTGTGACTTTCACCACAGTCTCAGTTGACGTTCCAGTAAAAACTGAAGAAAAAGTAAACACCGAGGATTTCTTTAACGAAAAGGAACAAATTTTAGAGACATTTTTAGCTGAAAACACCCCCGAAGTCAAATATGAACCCTTGGTTGAAATCAAAGAAGAATCTGAGGATCTTAAGAAAGAAGAATATAAAGAACAAATTAAGCCTTGTCAAATAGTTCTAGAAGACTTAAATGAAAAGAGAGCCCATGAGAAGAAAAACTCAATTGATAAGAAGAGTCTGAATACGGAAGAATCAGAAACACCCAAGAAACGACGTCAGCGTTCAGCATTGCGAACAAAATTACGGTTCTTCAAAAAGGATCGAGTATATGAATGCAAATATTGTGCAAAGGTCTATCATATCAGAAAACCATACGAAAAACACCTCCGAACTCAACACCAGAAGACTGAGGTAGAATTGCGGGAGCTGTTTCAGGACGAAGAGAAAGACATTCCAGAAGACATTGTACAACGCTGTCCAATTTGTTCTAAAATGTATCTAATGGCTAAAAGACTGAAAACTCACATAACTCTTCATGGCCCCGATGGAAAATTGGTTCACAAATGCCCAGGCTACTGCAAGATTTATTTTCGGACAAAAGAAGAAGCCATGGACCATGCTAAAGAGAAGCATAAGGATTGTTTTTATTGTGACATTTGCGACAAGTACTCACAAACACCAGAGTCCCTTAAAACTCACAAACGCACTCATACCAAACAGAAGAAGCAAATAAATCGCAATTTAATTTGTGATAAGTGTGCTAAGTCTTTTGCCAGTCGGACATCTCTGAATGATCATTCAAGATCGAATTGTGGAAGAGATCCACTCTACCGCTGTGAACTTTGTGATAAAAGGTTCAGCACAGCTGGCATTTTGAAGACTCATTCCTTGCTGCACAAAGACGAAACACCGTACGTGTGCGATAAATgtggaaaaacttttaaaattaaagcccaGTACAAGACGcacataaaaatgaaacacaCTGACAAAAAACCTTTCAAGTGCGAGCTCTGCCCTAAAGCATATCCCTATCGCGAAAGTCTTTTGACCCACATGGCCGTACATACTGGACTCAAACGCTATGCATGTGATGGATGCAGCAAACGGTTTACATGTATTTCAAATCTTCAAGCCCATAGAAAGGTCTATGCTGACACTTGTGGATTGACACCGTTAAACTCCAAACCTAGCACATACCTGGGGGTACAGAAGGGGATGCTTTTGATGGGAACAAAGCCTACGTATTAA
- Protein Sequence
- MPIAFRFPKDAKVMAMIILPDPSLPSTMMVQITTDKSGPKLVCPICNKALISLNGYVKHLKKHEPPGGYICNYCDERFCLEDHLKKHKDEKHKVLACQICHQTFDSAQDYRTHIKDIHQGIDRRMIKCEKCSMEFKTAQAAKRHTETKCGQIKPHQCDQCEIAFYTKYNLAEHKKIHSGEKKFCCSYCGKSFMSNGRLVIHERSHTGEKPYKCDVCGKCFAHRESIVTHSSIHTGVKLVVCKCCGSRFSCHSNLIKHRRTRPDTCGLPIYNSTKETKRNGNSRIPPGLMSSEIRIVRASKVINPNDEQKKNKVTSNTEEKKTKITNPSKDQENPKISKPRAKPKKRKFDSEDEEVIISRPRRSLRTKEYVPTEIHTSEPPESPPKDFDSDNYCDDPLFDSPIHDDSSDSENTDVKPVTFTTVSVDVPVKTEEKVNTEDFFNEKEQILETFLAENTPEVKYEPLVEIKEESEDLKKEEYKEQIKPCQIVLEDLNEKRAHEKKNSIDKKSLNTEESETPKKRRQRSALRTKLRFFKKDRVYECKYCAKVYHIRKPYEKHLRTQHQKTEVELRELFQDEEKDIPEDIVQRCPICSKMYLMAKRLKTHITLHGPDGKLVHKCPGYCKIYFRTKEEAMDHAKEKHKDCFYCDICDKYSQTPESLKTHKRTHTKQKKQINRNLICDKCAKSFASRTSLNDHSRSNCGRDPLYRCELCDKRFSTAGILKTHSLLHKDETPYVCDKCGKTFKIKAQYKTHIKMKHTDKKPFKCELCPKAYPYRESLLTHMAVHTGLKRYACDGCSKRFTCISNLQAHRKVYADTCGLTPLNSKPSTYLGVQKGMLLMGTKPTY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -