Pros040360.1
Basic Information
- Insect
- Platycheirus rosarum
- Gene Symbol
- su(Hw)
- Assembly
- GCA_963971375.1
- Location
- OZ020509.1:106987346-107000312[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00015 0.034 16.2 1.0 1 20 253 272 253 273 0.95 2 12 1.7e-05 0.0037 19.2 0.3 3 23 325 346 323 346 0.92 3 12 0.15 34 6.7 0.1 1 23 352 374 352 374 0.95 4 12 1.3e-06 0.00029 22.7 2.0 1 21 381 401 381 402 0.94 5 12 7.2e-07 0.00016 23.5 0.4 2 23 415 436 414 436 0.97 6 12 0.00021 0.046 15.8 6.2 1 23 447 469 447 469 0.99 7 12 2.2e-05 0.0048 18.8 0.6 1 23 475 497 475 497 0.97 8 12 4.8e-05 0.011 17.8 0.9 1 23 503 525 503 525 0.99 9 12 1.5e-07 3.4e-05 25.6 1.1 1 23 531 553 531 553 0.96 10 12 1.5e-05 0.0034 19.3 0.5 1 23 557 579 557 579 0.97 11 12 0.47 1.1e+02 5.2 0.4 1 21 618 638 618 642 0.88 12 12 0.7 1.6e+02 4.6 0.9 3 23 650 671 649 671 0.91
Sequence Information
- Coding Sequence
- atgggCTGGACCAAGTTGGAAATAGACAAAAAACCTATTCAAACTGCCCAAAGAAACGCCAATGTCAAAAGTATACGCACAGAACCAGAAAAACGAGAAGTTagtaaaaagcttattttaaacGATAGAAAAGCTATTCGAACCGAAACTGATGAAGATATTGAATTTATACGAACCGAACAACATAAATCAGAAGTTggaaaaaagcttattttaaacGATGGAAAAGCTGTTCGAACCGAAACTGATGAAGATATTGAATTTATACGAACAGAAAGAGAAAAACATGAAGTTGgaaaaaaggttattttaaaCGATAGAAAAGCAGTTCGAACCGAAACTGATGAAGATATTGAATTTATACGAACAGAAcgagaaaaacaagaatttggAAAAAAGCTTATTCAAGCGGAAACTAACGAAGATGTCAAATTTATAAGCACAGAACCAGAAAAACAGGAAGCCGCAAAAAAGTTGTTGTTAAACGACAAAAAAACCATTCGGGCTGTCcaaaaagaagaagatgtcgaatTTGTAAGCACAGAAATAGAAGCACCAACAGAGCATTATGTGTTAACTGAGATCAAAGGAAATGATGAAGATGACAACGAGATCGGGTTTATACTAACGGATAACTTCCAAGTCGAGAGTGAAGGACCAGTAGCTGAATGTATTGAAATTGAAGAAGAAGTGGATGTGAACGATAACGATGAAGATGTCGATGAAATGATTGTTAAGACTCAAGAGTTCATAGAGCACGTGTGTGGAAAATGTTACAAATCATTTCGGTCGCTTAAGGCTTTAAAGCGTCACAttgatttttgcatttttagcgCTGAACTAGTATCAAGAAGGGAAGAGATGCTTAAGAACATAGACAAAATTGAAAAGGAAGCCGCCCATATGCACAAAAAGGATATTTGCTTCTGCTGCGGTGATAACTACGACACATGTCATGGGGGACACATAAATTGCGGTGAATGCCCTAAGACCTTCAAAACCCAACTGAGTCTTGAGCGCCACATGTTCCTGATTCATTCAGAGAAAAACGATTTTCCTTGTAATATATGCAATGGTCGATTGCGCACATCGATTTTGTTAGATTTACATATCGATCAGCATATGACGCGCGGCAAACCATTTGCTTGCAAAGTATGTGGCAAAGATTTCACGCGGCAATATCATTTGAAACGTCATCTGAACTTTTCGTCATGTGGTGGTGGTAATAAAACTGAAACAATATCGTGCAAAGTTTGCGGAAAAGAGTTTGCCCGATTGGACAACTTACGTTCGCATTTAAAGAGCCATTTGGGCCAAGAATCGAAAAAGAAGGAAGATTATACTTGTCCATGTTGCAAGAAATGCTTCTACAGTTTGTCAACATTGAATATTCATATCCGGACACACACTGGAGAGAGGCCGTTTGATTGTGATCTTTGTGACAAAAATTTCCCATCGTTAGTTGCTTTGAAAAAGCACAGGAGGTATCACACAGGAGAGAAGCCGTATACTTGTTCGGTGtgCAAAGCAAATTTTTCCGTTAAAGAAGTTCTCAACAGGCATATGAAACGTCACACAGGAGAGAAACCGCATGCCTGTGACGAATGTGGCAAACGATTTATTCAAGCAACTCAACTAAGAAATCACATTCGTACCCACCTGAGGCCTCACGAATGTCCTGATTGTCCAGAGAAATTTAAATCTGCTGTACAATTATTAAAACATTCAAAAGTACATGCAcctcctaagaaaaaaaaacgttccaaAGCAGGAGATCCTCAAGCACCAGGTTCTCCTCAATTCGGAGAGACATCCACAGAAACAACGAAGAAAAGACCTAAGAAAAAAGGATACAGTTGTGAAGATTGTTTATTAACTTTCCAAAGCATTGCCTCATTTTTGCAGCACGAATCGTCTCAGACTCACATAGAAAACGCAAAACGATTTTGCCATGTTTGTGGTGAAGAGCTCAGCAACACAAAGGCGCTTCAATTTCATGTACTTAAATACCACGAATCACCAACGGAAGTTACgtCGTCGAAAAGTATTGAAGAGGTGAAGACAGAAAAGGACGAAGAGCTCATTATTCAAGAATATGTTCTCGAATCTGTTTCTGAAGTTGATATCAAACTGCTTCCAGAAAAAGCTATGGTTCAAAGTTTTACGATCATTGAAAAAGACAAAGAAACTTCTCCTGAATCCTTGAAACCCAAAAGTTTACTCACAAAATCCAGCCTTAGATCTGAACTTAGGAAGTCAATGGCAGAATGCTTACGTGATTCAGCTTCAAAACGAATTCAATTGGAATTAGAGGAGGAAGAGCTCAAAATTACCGAAAATGTTGGCAAATTGCTTGACATGCTGGTGGATGCAGAGACTCTTAATAAATTTGGCTGGCCGGCGAATTCTGTTGAAAAAGTCCTTTGTAAAGTAATTGAAAACTGTGGCCACAACATGTCGCAAACAACATTTACCGATGATTATTGCACCAGGATGAGGGAATATGTTAAATTACTCTTCACTGTCGTCATACAAAATGATACAATCAAGGAACTCCTTAATAATTATCCAATCGATGAGGTAATTGAATTTGTTCTTTcaaatgacgatgatgatgagtAG
- Protein Sequence
- MGWTKLEIDKKPIQTAQRNANVKSIRTEPEKREVSKKLILNDRKAIRTETDEDIEFIRTEQHKSEVGKKLILNDGKAVRTETDEDIEFIRTEREKHEVGKKVILNDRKAVRTETDEDIEFIRTEREKQEFGKKLIQAETNEDVKFISTEPEKQEAAKKLLLNDKKTIRAVQKEEDVEFVSTEIEAPTEHYVLTEIKGNDEDDNEIGFILTDNFQVESEGPVAECIEIEEEVDVNDNDEDVDEMIVKTQEFIEHVCGKCYKSFRSLKALKRHIDFCIFSAELVSRREEMLKNIDKIEKEAAHMHKKDICFCCGDNYDTCHGGHINCGECPKTFKTQLSLERHMFLIHSEKNDFPCNICNGRLRTSILLDLHIDQHMTRGKPFACKVCGKDFTRQYHLKRHLNFSSCGGGNKTETISCKVCGKEFARLDNLRSHLKSHLGQESKKKEDYTCPCCKKCFYSLSTLNIHIRTHTGERPFDCDLCDKNFPSLVALKKHRRYHTGEKPYTCSVCKANFSVKEVLNRHMKRHTGEKPHACDECGKRFIQATQLRNHIRTHLRPHECPDCPEKFKSAVQLLKHSKVHAPPKKKKRSKAGDPQAPGSPQFGETSTETTKKRPKKKGYSCEDCLLTFQSIASFLQHESSQTHIENAKRFCHVCGEELSNTKALQFHVLKYHESPTEVTSSKSIEEVKTEKDEELIIQEYVLESVSEVDIKLLPEKAMVQSFTIIEKDKETSPESLKPKSLLTKSSLRSELRKSMAECLRDSASKRIQLELEEEELKITENVGKLLDMLVDAETLNKFGWPANSVEKVLCKVIENCGHNMSQTTFTDDYCTRMREYVKLLFTVVIQNDTIKELLNNYPIDEVIEFVLSNDDDDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -