Pros027976.1
Basic Information
- Insect
- Platycheirus rosarum
- Gene Symbol
- -
- Assembly
- GCA_963971375.1
- Location
- OZ020508.1:54822083-54827369[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00077 0.17 14.0 0.5 1 23 115 138 115 138 0.97 2 13 0.0002 0.045 15.8 0.5 3 23 145 166 144 166 0.93 3 13 3.5e-05 0.0078 18.2 3.2 2 23 177 199 176 199 0.96 4 13 0.00013 0.029 16.4 1.7 2 23 248 270 247 270 0.95 5 13 3.2e-05 0.007 18.3 2.7 1 23 391 413 391 413 0.97 6 13 0.0011 0.24 13.5 2.1 1 23 419 441 419 442 0.95 7 13 2.8e-07 6.3e-05 24.8 2.1 2 23 455 476 455 476 0.97 8 13 0.38 84 5.5 1.9 2 23 482 503 481 503 0.96 9 13 2.4e-06 0.00054 21.8 1.8 1 23 509 531 509 531 0.96 10 13 0.00015 0.034 16.2 3.1 1 21 537 557 537 559 0.94 11 13 6.8e-07 0.00015 23.6 0.8 1 23 565 587 565 587 0.96 12 13 7.1e-07 0.00016 23.5 1.5 1 23 593 615 593 615 0.99 13 13 3.5e-05 0.0079 18.2 0.1 1 23 620 643 620 643 0.90
Sequence Information
- Coding Sequence
- ATGGACTTCGATATTGACAAAATGTGCAGGGTTTGCCTGAAAACAAACTTGGAGACAATATTATTGTTCGAAGAACCCAAGAAAGTTGGTGGGGTTAGTATTTGCGATATGATTTCAGAACTAACGATCTACAAGGTGCGTCGGCATGACAGTTTCCCACATCTTATATGTTACGAATGCATTGAGCGAGTGGAAAATGCTTACACCTTCAAAAAACAGTTTGAGCAATCTCAGCGTGAGATCATTGCTTATCTTCAGTCTATCAATAAATACGAACAATTTGCCGATATGAAGCCCATATCCAATGAAGAGAAAAGCACCCAGACTATTGATTCAACTTTGTATCCATGTGAGAAGTGCGatcaaaaattcattaaatatgaAAGGCTGCGGGAACACCGTGCTACCGCTCACAGGGGATCAGCAAATTTGTGTCGAATATGTCACAAAACATTCAACCGCTTGGCAGGTTTAAAAAGCCATATTGCTGCCGCGCATCCAGAGATGGGTTACCACAATTCCTCTAATCAATGTTATGTGTGCAATAAAATGTTTACACGCAGAGACCACGTTACCCGTCACTTAAAAAATGTACACAAAATCCAATCATCTGGAGATGGAATACAAATGGAAACAACAACAATGGACAAAGATGGGGATCTTTCACACCAAAACATTGAAGACGAAGAATGCAATGAGAAAAGCACACTGAATGACATAGCAGAGAATACACCATATATCGAATGTCTTGTGTGCTATAAACATTTTTCCAGCAAAAACCGTCTCAATCGACACATGCAAATCGTTCATCAACTCGATACTAATACAATTCTTAAACAGGAACTTAATGAAACTCTCGACGCTAAAAATGAGCCTGATGCGTATAGAAGCTTCacaaatgaagaagaattttcaAATGAGTACAACAAGGAAGATGATGACGTCGATGGCGAtggagatgatgatgatgaggatgatgatgaagatgatgatgatgatgatgatgatgatgatgatgaagatgattgCAATGAAAACGGAAATAATGTTATAGCTACCGCCGATGAAGATGAAATACATAACAACCATGAGTTTGTGGCTATAAACCATTTTATAAAACGTGAAGAGCCAATCATTGAATTGCAAATCTCACAAACTAAAGAGAAGGCATTTGCGTGTGACTTTTGTGAAATGCGATTCAATCGGGCTGATCATCTTAAAAATCACATGACCAAACATAATCCAGTCAAGCCATTCCAATGTGATAGCTGCAATGCAGGCTATGGAAGGGCAGATCATCTTAAACGTCACAAAGAAGTGCACCATTCCACAGATCCGAATAACAGCCAAACGAAAGCAGAGGTTTGCCAATATTGCAATAAGTCGTACAGTTCAAAATCTTATCTGCAAAAGCACATGCTTAAACATACCGAAAAATGTTGGAAATGTAAGCTGTGCTCCCTACAGTTTGAATCAAGCGAAGCACACAAAGAGCATCTTAAATCGCACAACAAAGACAAACCCTTTTTGTGTTCGGAATGTGGCCTGTGTTTCCCAAGAAAAAACTACCTCATTATTCATATGCGAAGGCACAACGGAGAACGACCATATAAATGTCAATATTGCGAAAAAGGCTTTCCTCGTTCTACTGATTTAAAAGCTCATGAAAAaTGTCATACAGGAGAGAAAACTCATTTTTGTAACGTGTGTGGCAAAGGATTCCCGCGACCATACAAATTGTCGGTACACATGCGAATTCACACCGGTGAAAAGCCCTACCAGTGCATGTATTGTCCGAAGGCTTTTGCTCAGTGCAACGATTTGAAAGCACACATTCGAAGGCATACGGGCGAACGGTTTAGGTGTGAAGTGTGTGGGGCaggttttatacaaaaatacaatttaacacaACATAAAGCTGATGCTCATGGAATTTTCGCCGAGTCACGAGTGGGCCGGGTGACTAAAGTTCAAATTAGTAACCCAAATACagagGCCAAATCAAATGTCATGAATGATACAGATGAAGAATTACAGCTTGGCCTTACGACCAATCTGGTCTTTCGTGGTGTTGCGCTTCATTAA
- Protein Sequence
- MDFDIDKMCRVCLKTNLETILLFEEPKKVGGVSICDMISELTIYKVRRHDSFPHLICYECIERVENAYTFKKQFEQSQREIIAYLQSINKYEQFADMKPISNEEKSTQTIDSTLYPCEKCDQKFIKYERLREHRATAHRGSANLCRICHKTFNRLAGLKSHIAAAHPEMGYHNSSNQCYVCNKMFTRRDHVTRHLKNVHKIQSSGDGIQMETTTMDKDGDLSHQNIEDEECNEKSTLNDIAENTPYIECLVCYKHFSSKNRLNRHMQIVHQLDTNTILKQELNETLDAKNEPDAYRSFTNEEEFSNEYNKEDDDVDGDGDDDDEDDDEDDDDDDDDDDDEDDCNENGNNVIATADEDEIHNNHEFVAINHFIKREEPIIELQISQTKEKAFACDFCEMRFNRADHLKNHMTKHNPVKPFQCDSCNAGYGRADHLKRHKEVHHSTDPNNSQTKAEVCQYCNKSYSSKSYLQKHMLKHTEKCWKCKLCSLQFESSEAHKEHLKSHNKDKPFLCSECGLCFPRKNYLIIHMRRHNGERPYKCQYCEKGFPRSTDLKAHEKCHTGEKTHFCNVCGKGFPRPYKLSVHMRIHTGEKPYQCMYCPKAFAQCNDLKAHIRRHTGERFRCEVCGAGFIQKYNLTQHKADAHGIFAESRVGRVTKVQISNPNTEAKSNVMNDTDEELQLGLTTNLVFRGVALH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -