Pros025753.1
Basic Information
- Insect
- Platycheirus rosarum
- Gene Symbol
- -
- Assembly
- GCA_963971375.1
- Location
- OZ020508.1:7415664-7418921[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00047 0.1 14.6 1.5 2 23 401 422 400 422 0.97 2 16 1.5e-05 0.0033 19.4 1.1 1 23 428 450 428 450 0.98 3 16 5.6e-05 0.012 17.5 0.2 1 23 456 479 456 479 0.98 4 16 3.8e-05 0.0084 18.1 3.5 1 23 494 516 494 516 0.98 5 16 0.0002 0.044 15.8 6.2 1 23 556 578 556 578 0.97 6 16 8.1e-05 0.018 17.0 1.8 1 23 584 606 584 606 0.98 7 16 4.8e-05 0.011 17.7 0.2 2 23 712 733 711 733 0.96 8 16 1.9e-06 0.00043 22.1 1.6 1 23 739 761 739 761 0.98 9 16 3.7e-05 0.0081 18.1 0.7 1 23 767 790 767 790 0.98 10 16 0.00033 0.074 15.1 1.7 1 23 801 823 801 823 0.98 11 16 0.00013 0.029 16.4 0.8 1 23 836 858 836 858 0.98 12 16 0.065 14 7.9 2.3 1 23 864 886 864 886 0.97 13 16 3.2e-05 0.007 18.3 0.3 2 23 892 914 891 914 0.96 14 16 0.072 16 7.8 0.2 1 23 922 945 922 945 0.95 15 16 0.96 2.1e+02 4.2 1.9 2 23 954 976 954 976 0.92 16 16 0.00068 0.15 14.1 2.0 2 23 982 1003 981 1003 0.97
Sequence Information
- Coding Sequence
- ATGTCGGTTAAATTAGATGATTCTGTTTGCCGGGTATGCCTTAGCTCCTCAGGCAGCATAACAATTTTCGATGAGTGCGGCAAAGATGATCAATTCCGTTTTTGTACATCTCTGGAGGCTTTCAAAAACGATGGACTTCCATCGAAACTATGCAAGAAATGCAATGATCATCTCAAAGTTGCGTACGATTTTCGTTTCCAAGCCATTTATGCAgaaaaatactttcgaaaaacaatttttttgcctTCGTTTAAAAAAGAAGATGATGGAGTCAACAGTGGTGCCGACTGTTCCTCTGATAAGCAAAGCATTAACCATTGTTCCGATGAACTGGACGAGAACATGGCAGAGATTGATATGTTGCTGGCCATCCACACAGAAGGTGTTGAGgatgccgatgatgatgatggagtCGACAATGATGATAAGATGATGGACACTTCAGAATTCTACAACGATGACAGTGCAGATATCGATGAGAAGCAAATAGAGATCATCGGCATGGAAACGttcgaaaaagaaaaacgtGGACAGAAAGATCAGAATATCAAGGTTGAAATCGCTAATGTTCCACCGCCACTTGTGTCCACCACAGAGGCCAATACAAGGTATGAATTGCCATCTGCTTCCTTAACAAACATGCCATTGGAGACTCCCCAAACTGACACAAGAAATATCAACGTTAATGAAGAACAAACTTGTGCCATGGATGAAATCCAGCAATACACTGATTCGAGTGCATTTTCTCATCATTCAGAACCTGTCCAGGACATACAAATGGAAAACAATGACGGCCGATCTCAGCATCTAGAAATCCATCCCATACTTAAGAATGATCCATCCAACTATGATTTCAATGCTCCACCGGTCGGTTTCGACTCATATTCAACTTCATCTCAGATTCAATATCAGCAAATGCCTCTCCAGGTCGACTATGAACCACAAAACACACTACCGTTACAAGAAACCACCCCCAACTCTGAAGGCTTTGATTTTTCTTATCAAGAACCCTTCACAGCCTATGAGACGCAAGCAAATGAAATAATCCCCACCCAACAGCAACAACCTGTTCATCAATTCGGACCCCAAAAAGAACCCGAACTGTCAAACGAAAACAATTTCAAGACTGAATATCTCCAAACTGTCGATCTTAATCTAAAGAAATCTAAATCCAAGCAATGCAGCCGCAAGGATAAGATCGAGTGCAATATTTGTGGAAGCTACTTCACCCATCTGAATTCATTAAAAACACATCTGCTGAAGCACTCCGGTGAGAAGCCTTTCAAATGCGAATTCTGCGATAAGGCATTTGCCCGCAAGACTGTTCTCAACATACACAGGCGATTGCACACCGGCGAAAAGCCATACAAGTGTTCCTTGTGTCCAAGTGCCTTTGTTACGAAGGAAGCTCTGGCGCGTCACTTACAAAAAGACCATGAAGAAGAGGTTGGTGTGAATTTCCGTCGTGATAAGGTCTCCTACATCTGCTCCATATGCAATAAGTCACGATGTTCCAAGTACTCACTGGCTTCGCATATGAAGACCCATTTCAATGAAACAAAGGCACGTCGAAAGGCCCTTCGCCAGAAACGAGAAAAAAAGACGACTGTCCCAGATGACATATCCTCCAACGACCTAATGGCACAGCACAATCTTCTTCTGAAGTATTCCTGCAAAATATGTCACAAGTGCTTTCCCAACAAATGGGAACTGTGTACCCATGCCGAGTCGCATAACATGAACAAGACTTTCGAGTGTGACGTTTGTCAGAGAACTTTCGAAAAGAAGTTCCAATTGCTTTATCACTTACAAACTCACGAGGGTGTTGAGGAAATAATGAAAGCTAAAGCGAAAGCAAATTCGGAACTAAAGTCCACCAGTAAAGCGATAGAAGTCAAAGCAGAAGACCAATCGCAACCCACAGAgaagaaatcgaaaaagaaACTTCGAGCTTCGAAGCGTCGGCGGAAGAAAGCGAATGTGGACAGTGAGCAGGAAGAAGAGGAAAGTAAAGAGGTGCAGAAACACCAAGAAAACAGTGAAGAAGCTAATGGAGATAAAATTTCATGCAAACAGAGGGTGATTCGAGCACAGCGCGAAAACTTGAGGGCGTTGCGCATTAGCAGCAAAATTGAGTGTCTTATATGCGAAGCTGTATTCACCCATCCGACGTCCCTGAAAACCCATATGCTTGTTCATTCGGGTGAACGCCCTTTTAAATGTGATTACTGTGATAAGTCATTTGCCAGGAAAACTGTTCTCAATATACATCGTCGACTGCATACTGGTGAAAAGCCTTACAAGTGCCCTCTCTGTGATAGTGCTTGCGTCACAAAGGATGCTCTAATGCGCCATATGTCCAAGGATCATGATGATGACCGGGATGCCGATAGAATCAAATTCACCTGTGGTGTCTGTCATAAGGCAATGGGTACCAAGTACTCCCTGCAGACGCACATGAAAATCCACGAACAGAACACGACAGAGAATGCAGCAAAGCTGAACTTCTCCTGTAACATGTGTACGGAGTCCTTTGATACAAAGACTGACTATGGGAAGCACATGGAAGTGCATGATTCACATAGAAATTTCCAGTGCGACTTATGCCAGGTAACGTTCGAGAAGAAATTCAAGTTACTTTTTCACCTGCAAACCCACAAAATTGAGGACTTGCCATGCAAAAAGTGTGGAGAAACTTTTACCATAAGagaaaatcTCATTCAGCATGTAAAGATGCAGCACATAGATCCCCAAAACATGGACTTCCAATGCCCTACCTGCAACATTGCTCAATACGATACTCGGGATTTGAAGTTGCACATGCTAAATGTCCATGAAGTTGTGATGGGGCCATTGAATTCTTGTGATATGTGTGGTGAGAACCATTCTACGGCGGCGGAGTACTATAAACACATGCATGACAAACATGATACAATCAGCAAAACTTGCAATGAGTGCAAGAAGTACTTTGACTCGAGGAAGGCCTTCGATAAGCACATATTAACGCATTACATGTGA
- Protein Sequence
- MSVKLDDSVCRVCLSSSGSITIFDECGKDDQFRFCTSLEAFKNDGLPSKLCKKCNDHLKVAYDFRFQAIYAEKYFRKTIFLPSFKKEDDGVNSGADCSSDKQSINHCSDELDENMAEIDMLLAIHTEGVEDADDDDGVDNDDKMMDTSEFYNDDSADIDEKQIEIIGMETFEKEKRGQKDQNIKVEIANVPPPLVSTTEANTRYELPSASLTNMPLETPQTDTRNINVNEEQTCAMDEIQQYTDSSAFSHHSEPVQDIQMENNDGRSQHLEIHPILKNDPSNYDFNAPPVGFDSYSTSSQIQYQQMPLQVDYEPQNTLPLQETTPNSEGFDFSYQEPFTAYETQANEIIPTQQQQPVHQFGPQKEPELSNENNFKTEYLQTVDLNLKKSKSKQCSRKDKIECNICGSYFTHLNSLKTHLLKHSGEKPFKCEFCDKAFARKTVLNIHRRLHTGEKPYKCSLCPSAFVTKEALARHLQKDHEEEVGVNFRRDKVSYICSICNKSRCSKYSLASHMKTHFNETKARRKALRQKREKKTTVPDDISSNDLMAQHNLLLKYSCKICHKCFPNKWELCTHAESHNMNKTFECDVCQRTFEKKFQLLYHLQTHEGVEEIMKAKAKANSELKSTSKAIEVKAEDQSQPTEKKSKKKLRASKRRRKKANVDSEQEEEESKEVQKHQENSEEANGDKISCKQRVIRAQRENLRALRISSKIECLICEAVFTHPTSLKTHMLVHSGERPFKCDYCDKSFARKTVLNIHRRLHTGEKPYKCPLCDSACVTKDALMRHMSKDHDDDRDADRIKFTCGVCHKAMGTKYSLQTHMKIHEQNTTENAAKLNFSCNMCTESFDTKTDYGKHMEVHDSHRNFQCDLCQVTFEKKFKLLFHLQTHKIEDLPCKKCGETFTIRENLIQHVKMQHIDPQNMDFQCPTCNIAQYDTRDLKLHMLNVHEVVMGPLNSCDMCGENHSTAAEYYKHMHDKHDTISKTCNECKKYFDSRKAFDKHILTHYM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -