Pros027977.1
Basic Information
- Insect
- Platycheirus rosarum
- Gene Symbol
- -
- Assembly
- GCA_963971375.1
- Location
- OZ020508.1:54836400-54842140[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0038 0.85 11.8 2.0 1 23 114 137 114 137 0.96 2 13 0.064 14 7.9 1.8 3 23 144 165 143 165 0.94 3 13 1.1e-05 0.0025 19.7 1.7 2 23 175 197 175 197 0.96 4 13 1.2e-06 0.00026 22.8 2.3 1 23 326 348 326 348 0.97 5 13 9.9e-07 0.00022 23.0 4.8 1 23 354 376 354 376 0.97 6 13 1.7e-05 0.0037 19.2 1.5 2 23 383 405 382 405 0.95 7 13 1.3e-05 0.0028 19.6 4.6 3 23 419 439 418 439 0.96 8 13 0.0042 0.93 11.6 0.3 2 23 445 466 444 466 0.96 9 13 1e-06 0.00023 23.0 0.4 1 23 472 494 472 494 0.96 10 13 9.4e-06 0.0021 20.0 1.0 1 23 500 522 500 522 0.98 11 13 9.2e-07 0.0002 23.1 0.8 3 23 530 550 528 550 0.96 12 13 4.6e-07 0.0001 24.1 4.6 1 23 556 578 556 578 0.99 13 13 0.00016 0.035 16.1 0.1 1 20 583 602 583 606 0.90
Sequence Information
- Coding Sequence
- ATGCTAGACTTTGATATTGACAAAATGTGCAGGGTTTGTCTCGAAACAAATCTTGAGTTATATTTGTTGTTTGATGAACAAAATGCAATTGATGGCGTCTTCTTATCACAAATTATTTCAGATATAACAATATTTAagGTTCGCCGGCACGATGAATTTCCTCATCAAATTTGTTTCCATTGCATGGAAAAAGTACGTAGAGCGTACGAATTCAAGAAACTATTTGAAACATCCCACCGTAAACTACTTTCTTATCTGGAACCTACCAATAAATTAACGATAGACCTAAAGCCTGATAATAAAAATGACAAGTGCATCCAAACGGAAGACTCGACACTCTTTCCCTGTGAGAAATGTGATGAAAAGTTCATGAGCTACCATCGACTGAGGGAACACCGTCTTGTATCACATAAAGGAACGCCAAATATTTGCCGGTTCTGTTGTAAATCATTTATGCGTCTTGCAGACCTTAAAAACCATATTGCTGTCCGTCATccagaaacaaataattttaatcctCCCGAATGTCCggtttgtaataaaaaatttgCTCGTAAAGAACACGTCAACCGGCATTTGtcgaaaattcacaaaatagaATATGAACACTTGTCCGATGATGAAGCCAGCATACTAAATGAAACAGGGTCAAATGATGGCGAATCGGGTATTCTTCTTGAAACTGAAATAGATTACACAAAccttataaaagaagaaaacccATGTGAAATTCTACCAAATAATAATCCAGAAGATTTTGCAATTGATGACTGCAGCATGGAAAATCCGTTCAGTGCCGAGGATGATATCCCATTGTCTGGATTGCAAAAAACTATTCATGCAAAAAATGTAGAAGATTCCTATATCAGTCCCACCGAACATTCGCCTGATGACTCAAAATCTTTAGaaatagaaattattaaaaacgaaGAACCACAGCCCATTGGGTCTTCTCAAGAAACAACTAGTTCTCCATTTAAATGTAACTTATGTGATAAATCATTCGGCCGAAACAGTACTCTGAAACGACATTCTTTGTCGCACTTAGAAGAAAAACCATTCCAATGTAAAATCTGTGATAAAAAATTCAAGAGATCTGATCATCTTAAAAGCCATGCAAGCAAACATGGCGAAACAGAGACTTTAAAATGCGAATATTGCGATCGTGAATTTAATCGATTAGATCTTCTTAAAAGACATAAAGAGAAAACGCATAATATTGAATGGTCACGTGATCCAACCAAATTAAATCATTGTAAATTTTGTAATAAGTCATTTAGCTCTAAAGCTTATCTTCAAAAGCATATGAGTTTGCATACAAATATGTCTTGGAAATGTAAGCTTTGTCCAGCAGAATTTCAATCTAGAGAGGCTTTGAAGGAACACAATAAATCACACAACAAAGAAAAACCATATTTGTGTTCGGAATGTGGGATGCGTTTTGCAAGAAATGATTATCTATTGATTCATATGAGAAGACACACCGGAGAGAAACCTTACAAATGCAGATATTGCAACAAGGGATTTCCGCGAGCAACTGACTTAAATGTTCACGAAAAgtaTCATACAGGGGAGAGAACACACTTATGTTCAGTTTGCGGGAAAGGATTCCAGCGATCTTACAACTTGGTTGTACATATGCGAGTGCATACTGGGGAGAAGCCATATAAATGTTCTCATTGCCCTAAGAGCTTTGCCCAGTGCAACGACTTAAAAGCACACATAAGAAGGCACACTGGTGAGCGGTATAAATGCAAAATATGTGGAATTGGATTTATTCAAGGATACAATTTAACGCAACACAACATCGATGTGCATGGTGTTGAAGGGCAGGCACGAAAAGGCCGAGTTTATAAGGTTAAGCCAAATACATCTATAGCAGAGGTAATTATTCATAGCTTTTTATGTTATTAA
- Protein Sequence
- MLDFDIDKMCRVCLETNLELYLLFDEQNAIDGVFLSQIISDITIFKVRRHDEFPHQICFHCMEKVRRAYEFKKLFETSHRKLLSYLEPTNKLTIDLKPDNKNDKCIQTEDSTLFPCEKCDEKFMSYHRLREHRLVSHKGTPNICRFCCKSFMRLADLKNHIAVRHPETNNFNPPECPVCNKKFARKEHVNRHLSKIHKIEYEHLSDDEASILNETGSNDGESGILLETEIDYTNLIKEENPCEILPNNNPEDFAIDDCSMENPFSAEDDIPLSGLQKTIHAKNVEDSYISPTEHSPDDSKSLEIEIIKNEEPQPIGSSQETTSSPFKCNLCDKSFGRNSTLKRHSLSHLEEKPFQCKICDKKFKRSDHLKSHASKHGETETLKCEYCDREFNRLDLLKRHKEKTHNIEWSRDPTKLNHCKFCNKSFSSKAYLQKHMSLHTNMSWKCKLCPAEFQSREALKEHNKSHNKEKPYLCSECGMRFARNDYLLIHMRRHTGEKPYKCRYCNKGFPRATDLNVHEKYHTGERTHLCSVCGKGFQRSYNLVVHMRVHTGEKPYKCSHCPKSFAQCNDLKAHIRRHTGERYKCKICGIGFIQGYNLTQHNIDVHGVEGQARKGRVYKVKPNTSIAEVIIHSFLCY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -