Basic Information

Insect: Platycheirus rosarum
Gene Symbol: -
Assembly: GCA_963971375.1
Location: OZ020509.1:62249094-62259813[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00014 0.032 16.2 1.3 2 23 108 129 107 129 0.98

2 16 8.5e-07 0.00019 23.3 0.7 1 23 135 157 135 157 0.96

3 16 0.00013 0.03 16.3 0.3 1 23 163 185 163 185 0.98

4 16 0.00024 0.054 15.5 0.9 1 23 191 213 191 213 0.97

5 16 0.00088 0.2 13.8 4.1 3 23 221 241 219 241 0.98

6 16 8.6e-05 0.019 16.9 4.5 1 23 247 269 247 269 0.99

7 16 2.1 4.6e+02 3.2 3.6 1 21 380 400 375 401 0.94

8 16 3.3e-06 0.00073 21.4 0.1 1 23 409 431 409 431 0.98

9 16 0.00078 0.17 13.9 0.1 2 23 433 455 432 455 0.91

10 16 0.00092 0.2 13.7 0.9 1 23 461 485 461 485 0.95

11 16 1.1e-06 0.00024 22.9 3.6 1 23 491 513 491 513 0.99

12 16 5.8e-07 0.00013 23.8 1.0 1 23 519 541 519 541 0.99

13 16 6.5e-05 0.014 17.3 0.1 1 23 547 569 547 569 0.96

14 16 0.0016 0.36 12.9 0.2 1 23 575 597 575 597 0.97

15 16 0.00021 0.046 15.7 4.1 1 23 603 625 603 625 0.99

16 16 1.5e-05 0.0033 19.4 1.0 3 23 633 653 631 653 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00014	0.032	16.2	1.3	2	23	108	129	107	129	0.98
2	16	8.5e-07	0.00019	23.3	0.7	1	23	135	157	135	157	0.96
3	16	0.00013	0.03	16.3	0.3	1	23	163	185	163	185	0.98
4	16	0.00024	0.054	15.5	0.9	1	23	191	213	191	213	0.97
5	16	0.00088	0.2	13.8	4.1	3	23	221	241	219	241	0.98
6	16	8.6e-05	0.019	16.9	4.5	1	23	247	269	247	269	0.99
7	16	2.1	4.6e+02	3.2	3.6	1	21	380	400	375	401	0.94
8	16	3.3e-06	0.00073	21.4	0.1	1	23	409	431	409	431	0.98
9	16	0.00078	0.17	13.9	0.1	2	23	433	455	432	455	0.91
10	16	0.00092	0.2	13.7	0.9	1	23	461	485	461	485	0.95
11	16	1.1e-06	0.00024	22.9	3.6	1	23	491	513	491	513	0.99
12	16	5.8e-07	0.00013	23.8	1.0	1	23	519	541	519	541	0.99
13	16	6.5e-05	0.014	17.3	0.1	1	23	547	569	547	569	0.96
14	16	0.0016	0.36	12.9	0.2	1	23	575	597	575	597	0.97
15	16	0.00021	0.046	15.7	4.1	1	23	603	625	603	625	0.99
16	16	1.5e-05	0.0033	19.4	1.0	3	23	633	653	631	653	0.98

Sequence Information

Coding Sequence: ATGGCAATGAAGATAAAAACTGAAAATGATGTTCTTATACACAATTTTACACCAAATCAATCTATAGAAATAAATGGTCAAGAAATATGTGACGATGATGTCAATAATTGTTCTCAACTTGCATCACTCGGAGACCAAACCATAGTGGATCATTGCGCTGAAAACCGATCTCAAACAAACCCTCAAGCAGACTCTAGTATTAACATCCCGAACGAAGTCATAGTTCCCGATAACTTCGGACCGCAATTCTTTTCTATAGTGGAAATCGatgataaaaaagttaaaaaggaaCCCATGGATACTCAAGCGTTGCAAAAAAATCAATGCTGGGTTTGTCGAAAAAtttttcgagGGAAATGCCTCCTAGAAATACACATGCGCGTTCACACTGGAGAAAAGCCGTTCAACTGCACAATATGTGGAAAAAACTTTCGACAAAAAGCTGCTCTCAAAACGCATTTAATAAATCACACCAAAATTAAGCCATTCAAGTGTGATCAATGTGATCGATCATTTGTCGCTCAAAAAGACCTAGATGCTCACAGCCTGACTCATTCTCGTGAAAGACCTTTTAATTGCGATGTCTGCAATAGGGCTTTTATCTCTGAGAAAACTTTGAAATATCACCGTGCTCGACATACTAGGGGATATCCATTTGGCTGTGACATATGCGAAATGAGGTTTTGCTATATGCATCTACTTCGGCGGCACATGCTAACTCACACTGGTGAAAAACCATTCAAGTGCAAATATTGTGATAGAAGTTTTCGACAACGACACGAATCTGTTGTGCATATGCAAACACATCCAGAAGCAAAAGAAGACAAGGATAAGCCATCATTACAAGAGGTTCTTGAACTTATAAACTCTTTACCTAGAGAAGGAGACGTATGTGAAGCCAAAGAAATGGTACTTCCACTAACAAACGAAATCAAAGGAATTCAGCCAAATGAATCTACATCTAGTTTAAATATCCCTAACCCTCTATCCACTTATGTCGACCAGCAGTTTAAAGTTACACATGAAATTTTAACAAATGCAAATATTGGCGAAAGTAATTGCACCGAATTGGATTTAGCAAATCTCTTAGAAACTAAAATTAAACAGGAGCCCATAGAAATAATGTGCGATAAGAAATTCATTTGCAAATGCTGTGGAGCTCGATTTGCATTACAAAATACCTTAAGTCATCATGTGAGGCAAAATATGTGTTCGCAAAAGCATTTTACCTGTCCCAAATGCGAAAGAGTGTTCGCCTCCCAAGAGAAACTTGACGCTCATATACTTACGCATACATACTGTGACATATGCGGAGAGGCCTTTAGTAATAGTGAAGAAATCGaagcacacaaaacacaaaagcACGATTTGAAAGTGAAGCATCCGTGTCCGCATCCAAATTGCAACAAAGctttTTATAAAGGAGGTCAACTTGAAAAGCACATTGAATCGCACAGCATCACAAAGGAATTTCAATGCACTCTTTGTGAAAAAAGCTTCAATCGACAATTTTATCTCACCCAGCACATGAATCGTCACACCAAAACACGGCCTTTTAAATGTGAACAATGTTCAAAGGCATTTTACAGCTCCGGCGAATTACAAAGGCATATTATGAGGCACACTGGCGATCGTCCGTTTGCCTGTGACATGTGCGACAAGACCTATCCATTGCCTAGTGAATTGAGAGTTCACAAACTTTCTCATACGGGCGAACGACCCTTTGCCTGTGAGTTTTGCCCGATGCGATTCGCATTTGCAAACGTTCTTAGGAAGCACCTGATAACGCACACTGGCGAAAGATCATTCAAGTGTTCAATCTGTGGTCGAGGATTTGTTCACAAGCAAAACTGTGAAGACCACATTAAAACGCATTCAGGTGAAAAAGACTACGGCTGTGAACTTTGCGAGTTAAGATACTACACAAAAGATTCACTACGGAAACATATGAGAACTCACAAAAAGCTTCCTGCCACTGAGAATGATGTAAATGAAAGTTCGGAAAGTATGATTTAA
Protein Sequence: MAMKIKTENDVLIHNFTPNQSIEINGQEICDDDVNNCSQLASLGDQTIVDHCAENRSQTNPQADSSINIPNEVIVPDNFGPQFFSIVEIDDKKVKKEPMDTQALQKNQCWVCRKIFRGKCLLEIHMRVHTGEKPFNCTICGKNFRQKAALKTHLINHTKIKPFKCDQCDRSFVAQKDLDAHSLTHSRERPFNCDVCNRAFISEKTLKYHRARHTRGYPFGCDICEMRFCYMHLLRRHMLTHTGEKPFKCKYCDRSFRQRHESVVHMQTHPEAKEDKDKPSLQEVLELINSLPREGDVCEAKEMVLPLTNEIKGIQPNESTSSLNIPNPLSTYVDQQFKVTHEILTNANIGESNCTELDLANLLETKIKQEPIEIMCDKKFICKCCGARFALQNTLSHHVRQNMCSQKHFTCPKCERVFASQEKLDAHILTHTYCDICGEAFSNSEEIEAHKTQKHDLKVKHPCPHPNCNKAFYKGGQLEKHIESHSITKEFQCTLCEKSFNRQFYLTQHMNRHTKTRPFKCEQCSKAFYSSGELQRHIMRHTGDRPFACDMCDKTYPLPSELRVHKLSHTGERPFACEFCPMRFAFANVLRKHLITHTGERSFKCSICGRGFVHKQNCEDHIKTHSGEKDYGCELCELRYYTKDSLRKHMRTHKKLPATENDVNESSESMI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -