Pros049806.1
Basic Information
- Insect
- Platycheirus rosarum
- Gene Symbol
- -
- Assembly
- GCA_963971375.1
- Location
- OZ020510.1:105616886-105622491[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.89 2e+02 4.3 0.9 3 20 111 128 110 132 0.84 2 20 0.00022 0.048 15.7 0.7 1 23 138 160 138 160 0.98 3 20 0.00022 0.05 15.6 3.0 2 23 169 190 168 190 0.97 4 20 0.00034 0.075 15.1 2.5 1 23 196 219 196 219 0.97 5 20 0.098 22 7.3 5.6 1 23 251 273 251 273 0.95 6 20 5.9e-07 0.00013 23.8 1.1 1 23 279 301 279 301 0.98 7 20 1.1e-06 0.00024 22.9 1.2 1 23 307 330 307 330 0.97 8 20 0.0035 0.77 11.9 1.8 1 23 340 363 340 363 0.96 9 20 1.9e-07 4.3e-05 25.3 0.4 3 23 453 473 451 473 0.97 10 20 4.1e-06 0.0009 21.1 7.8 1 23 479 501 479 501 0.99 11 20 0.00082 0.18 13.9 1.0 1 23 512 536 512 536 0.97 12 20 0.025 5.6 9.2 0.1 1 20 542 561 542 563 0.93 13 20 0.0011 0.24 13.5 0.4 1 23 602 624 602 624 0.98 14 20 9.8e-06 0.0022 19.9 1.2 1 23 630 652 630 652 0.98 15 20 0.00054 0.12 14.4 2.5 1 23 658 680 658 680 0.96 16 20 0.00022 0.048 15.7 4.1 1 23 686 708 686 708 0.98 17 20 0.0021 0.46 12.6 3.1 1 23 803 825 803 825 0.98 18 20 0.00044 0.098 14.7 2.0 1 23 831 853 831 853 0.98 19 20 5e-05 0.011 17.7 0.2 1 23 860 882 860 882 0.97 20 20 7.3e-05 0.016 17.2 2.1 1 23 888 910 888 911 0.95
Sequence Information
- Coding Sequence
- ATGCAGAACGACGTCGATTTGCTTACTCCACTACCTGTGGAGTTATCCACTCCAAATGGAATGCTTTATTCAACGACCCACATACATGATAGGTACTTGGAAAATGAATACTACAATTTTGGTATAGATGGCTTTACGACGACCGACATCGATGATATACCATCTACAGTAGTCGGCTTAAGTCCAATCCAAGAAGAGACTAATTGCTCGCTGATTGCAAATGCACTGGAACCTGTGTTCTCTCCTGTCGAAACAGCCCCACCAGTAACAAATTTTGAAAGTCCCAATGTACCGGCAGCTGAAAATCCACCTATATTCAAACAACTTTTATGCGATCTGTGTTCGGAGACTTTCTCAACAACTCAAGCACTCCGTTTTCATTGGCATGCCCAGCATATTTCAACTAAAGAATTCCGATGTCGTAAATGTCCGTTGTCGTTCAACTTTGAGTCCAATCTTTTATTACATCTAGCCTCGCATGTTCCCAGTTGCAGTACGAACAAACAATGTCCCGAGTGTCATAAGAAATTCAACCGGATATCTAGCTTCAAAGGACACCTCAAGGCACATCAGACCAGCGACCGATTCAAGTGCAGTCGTTGTGATAAGGAGTTCGAATTCAAAGACTACTACGAAAAGCATTTAACGAAGGCACATAAACACGGCATTGATGGTACCGTCGAAGAGATTTTGTACAGAGCTGTAAACAAATCAAGGCTTCGGAAGAAATCTAAGCTAGTTAAAGGCAGATACCGCTGCCAGCATTGCGAAAAGAAATTCTTGAAACCTTGCTTGCTGAAGCGACATGAGGTTTCCCATACAGGAGAAAAGCCATTTCAATGTAATGAATGCAACCAGGGATTTACACAGAAAACGTCACTTGAGAGGCATATGCTGTTGCACCAGGGCGTTAAAGAGTTCATATGTCCAAAATGTAATcacagtttttcccaaaaaaacaacCTGATAGTCCATATTCAGCGAGCACATCCAGTTAAGATCGAAGGTGATGGTGTGTTTGTTTGTGAATCTTGTCCATGTGTTTTTAAAACGCTCAGAAGTGTCAATCGTCATCGATCAATGGAGCATCCTGAAATAAATAATTCGGCTGATAACGAGGATGATGAAGATGACAATGTGAATGTAGCAAGAGTAATGGAACAATTGAAAAGTTTTCAAGAATCCATGCGGAGTATAGATACAAATCCACCTGAATTAGAGCTTTCGATTGTGAAGCCACCATCGCCTGAGCCTGTAGTCAACACAATTACTGTTATCGATACAATAAATCCGAAAAAAGAGAAGACCTATACAAAAATCAAGGAAATAATTTATAAAGGACATCGGACAATTGCTTGTGTATATTGTGACAAACCGTTTAAGAGGCAATACGATCTTTTGAGACATCTTCGAACTCATACACAAGAAAAGCCATATAAATGTAATACATGCCACAAGAGTTTCTCAACAAGCTGTGACCTCAAAAGGCATCTAAAAATTCATAGGCCTTATAAGGAAATTCCATCTAAAGCTTATCAATGTGCAGCAGATGATTGTCACAAGCGTTTCTCATCATTACGTGCATTAGATATTCACACAAAGAACCATTCAGTTTCCATATCATACATGTGTCCAGTATGCgcgaaaatatttatttccaaaGCTGGTTACTCATCCCACAAACATATATCGAAAGATAAAGAGCTCGAAAGCATTCGTCCGTTTTTGGAAGCCCCTATACCgattaaaaatgagaaagaaacCAACAAAGCcttaaaagaagaagaatatgCTAAAAGAAACTATCAGTGCTCCGTATGTGGTTTGAAAGTCaaaaatatgtcacgtttaAAACAACATGAAGCTACACACTCTGAAGAGAAACCATTTCAATGTGGCATTTGTTTTAGAACTTACTCTTCTCGAAGCTCCCTCAATCTTCACCTCAAAATTCACACTggtgaaaaaaatcacatttgtgaagTGTGTAATGCCAAATTTAATACAAACTGCATGCTGGTTCGACATATGATCTCGCACAGTGATGAAACTAAATTTTCCTGTCCCTACTGCTATAAACGCTTTAAAACCAACGACTCATGCAAAGCTCACATTCTCACCCACGCTCGCAGTCTGCTGGCCACTCCGAAATCTCCGTCCCGTGATAAATCTGCCGATTCTATTGAAAACCACGAAGAAACTCCAGCATCAACAACATCTCAGCAATATATTGCTATCGTTCAGAGTCCTGAAAGCAATCTATCACCGAAGTTCATTCAACTAGAATTAGTGAAAAATTGTAAAAGGCACAAACACAAGAATTTCACCATTGAAACGTTGCCACCGAACAAATCGCCGGAGAAATCCATAGAACAATCGGTAAAACACATAAATCAAACTAGGCGCCACACCTGCAGGCAGTGTGGAAAGTCTTTCTTAAGAGCAAATGATGTCTTACGTCACAAAAGAACTCATACAAAGGAAAAGCCATATCGATGCACTATGTgctcaaaacaattttctttgatGTCCACTCTGGTGACTCATAGGAAAATTCATGACCCTCAGAGGGAGACTTTCGATTGCCAAGTGTGTGGTAAAAAATATGCAACACAAATGGTGCTGACTGTGCACTTAAGAATTCACACAGGCGAAAGACCATTTGAGTGTGAGGTGTGTAAGAGGACTTTTCGAACTCCTGGGCACAAGATTGCACATATTAAGGCACATCATAAGAAAAGCTGA
- Protein Sequence
- MQNDVDLLTPLPVELSTPNGMLYSTTHIHDRYLENEYYNFGIDGFTTTDIDDIPSTVVGLSPIQEETNCSLIANALEPVFSPVETAPPVTNFESPNVPAAENPPIFKQLLCDLCSETFSTTQALRFHWHAQHISTKEFRCRKCPLSFNFESNLLLHLASHVPSCSTNKQCPECHKKFNRISSFKGHLKAHQTSDRFKCSRCDKEFEFKDYYEKHLTKAHKHGIDGTVEEILYRAVNKSRLRKKSKLVKGRYRCQHCEKKFLKPCLLKRHEVSHTGEKPFQCNECNQGFTQKTSLERHMLLHQGVKEFICPKCNHSFSQKNNLIVHIQRAHPVKIEGDGVFVCESCPCVFKTLRSVNRHRSMEHPEINNSADNEDDEDDNVNVARVMEQLKSFQESMRSIDTNPPELELSIVKPPSPEPVVNTITVIDTINPKKEKTYTKIKEIIYKGHRTIACVYCDKPFKRQYDLLRHLRTHTQEKPYKCNTCHKSFSTSCDLKRHLKIHRPYKEIPSKAYQCAADDCHKRFSSLRALDIHTKNHSVSISYMCPVCAKIFISKAGYSSHKHISKDKELESIRPFLEAPIPIKNEKETNKALKEEEYAKRNYQCSVCGLKVKNMSRLKQHEATHSEEKPFQCGICFRTYSSRSSLNLHLKIHTGEKNHICEVCNAKFNTNCMLVRHMISHSDETKFSCPYCYKRFKTNDSCKAHILTHARSLLATPKSPSRDKSADSIENHEETPASTTSQQYIAIVQSPESNLSPKFIQLELVKNCKRHKHKNFTIETLPPNKSPEKSIEQSVKHINQTRRHTCRQCGKSFLRANDVLRHKRTHTKEKPYRCTMCSKQFSLMSTLVTHRKIHDPQRETFDCQVCGKKYATQMVLTVHLRIHTGERPFECEVCKRTFRTPGHKIAHIKAHHKKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -