Pros025419.1
Basic Information
- Insect
- Platycheirus rosarum
- Gene Symbol
- -
- Assembly
- GCA_963971375.1
- Location
- OZ020508.1:1784181-1785621[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.3e-07 0.00021 22.5 0.1 7 38 22 53 17 59 0.90
Sequence Information
- Coding Sequence
- ATGGTGCGAACATATAAGAAAAAAGGTGAACGAAACGAAGAAGTTGAAGAGGCATCCGTTAAATTAGCAGTTAACGAAGTAGTGGAAAGGACTTTGTCTTTTAGAAAAGCGGCATTAAAATACAACCTTAAAAAATCAACATTGCAAAGCAGAGTGCAGAAATATAGAAAAGCCCTTTCTGATGATAAACCTTCACGAAATTTTCACTCTAAGTTTACAAGCCTACAAGTATTTTCATTGCAAGAGGAGGAGCATTTAAATGAGTATATTATTAATTGCTGCAAAATGCATTACGGAGTCACAACGCAACAAATTCGGAAACTCGCATTTGAATATGCAAAAGCCTTAAATTTGAAATACCCAACGAAATGGGATGACAACCAAATGGCTGGTCTAGATTGGTTACGCAAATATAGAGAACGGAATCCTAATCTTAGCTTGCGAAAGCCTGAGAACACAAGTACTGCACGTTCATTCGCATTTAACAAAACGGCTGTTGCAGAGTTTTATAAGAACTTGGCTGAAGTTCTTGCACGACATATTTTTTCCTCGGACAGAATTTTCAACTTTGACGAGACAGGGGTGTCAACTGTCCTGGAAACACCCAAAGTTTTGGCACCAAAAACACAAAGGCAAGTAAGGCAGATTGTCTCCGCTGAGAGGGGCGAACTGGTAACTTTTGGCGCCATTATTTCTGCAAGCGGAAACACAATCCCCCCACTATTCGTATTCCCACGTGTGCATTACAAGGATCATTTCCTCGATGGCTCACCCGAAGGAAGCATCGGGGCTGCGAACAGGAGTGGATGGATTAATTCAGACATATTTGTAAGTGTGCTAAAGCATATTCAAAAGCACACTCTTAGCTCAAAAGAACATCCGATCCTATTGCTATGCGATAATCATGAAAGCCACATCAGCCTACAAGCCATTATGTTTGCTCGAGCTAATGAATCTTTTACTGCGAAGAATATTATAAGTGGATTTTCTAAGCCAGGTATATGGCCATTTAATGAAATGGCTTTTAGCGATACAGACTTTGCTCCAATTGAAGTTTTGTCTTCGAATACTTTGAACAATATTCCACCGAACCCAGAAACAAATTCTGTTGTATTAGAACCACAAACTTCTTTATCTTCTCCAGTGACTAATAGAAATTTACAGAATCCGCTTGTTCGTTCCAATGATGCTTCTGATTTCTCACCCACATCCTTGCTCCAAGGTCTTCATGAACTTATCGAAGAATCTTTTTCAACCACCTAA
- Protein Sequence
- MVRTYKKKGERNEEVEEASVKLAVNEVVERTLSFRKAALKYNLKKSTLQSRVQKYRKALSDDKPSRNFHSKFTSLQVFSLQEEEHLNEYIINCCKMHYGVTTQQIRKLAFEYAKALNLKYPTKWDDNQMAGLDWLRKYRERNPNLSLRKPENTSTARSFAFNKTAVAEFYKNLAEVLARHIFSSDRIFNFDETGVSTVLETPKVLAPKTQRQVRQIVSAERGELVTFGAIISASGNTIPPLFVFPRVHYKDHFLDGSPEGSIGAANRSGWINSDIFVSVLKHIQKHTLSSKEHPILLLCDNHESHISLQAIMFARANESFTAKNIISGFSKPGIWPFNEMAFSDTDFAPIEVLSSNTLNNIPPNPETNSVVLEPQTSLSSPVTNRNLQNPLVRSNDASDFSPTSLLQGLHELIEESFSTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -