Basic Information

Gene Symbol
-
Assembly
GCA_963971375.1
Location
OZ020508.1:59540309-59540884[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 6e-11 5.7e-08 33.9 0.0 1 37 13 48 13 56 0.90
2 2 3.6 3.4e+03 -0.6 0.0 17 23 129 135 125 137 0.85

Sequence Information

Coding Sequence
ATGTTAACAGTTTCCAAGAAGAGATCTGTTAATTGGACAGAAGCTGAAATGAATAATGCTTTGAAAGCTGTGGAACGCGGTTTGACACAGCGAGAAGCTTCCAAGCGCTTCAACATTCCACGCAGGACTTTGAGGAACCACATCTGCAGTGGTTCTACTAAAAAGAAACTGGGACGTTCTTCAACACTCACAGCCGAACAAGAAACTGATCTGTGCCAAAGGATCGTGAGGCTCTCTCAGGTTGGCATGCCACTCACGCCAAAAATGCTTAGATACCAAGCGGCCGTCTTTTGTAACTTAAACAATATTCCGAATAAGTTTTGCAATTCGGAAAATGGTGCTGGGAGAAAGTGGCTGCGGTTATTTATGAGACGTCACCCGGAATTATCCGTACGCAAGGCTCAGATGATCAATCCAGCTAGGGCCCAAAAACTAAACAGGTTTATTGTCAATGATCACTTCGAAAAAGTCAGGATCCTGATGGAAAATCTGAACATCCAACAAAGACCAGAGTGCATTTACAACATGGACATGCGCTGcagtgattattttgttttattcttttttatgaaataa
Protein Sequence
MLTVSKKRSVNWTEAEMNNALKAVERGLTQREASKRFNIPRRTLRNHICSGSTKKKLGRSSTLTAEQETDLCQRIVRLSQVGMPLTPKMLRYQAAVFCNLNNIPNKFCNSENGAGRKWLRLFMRRHPELSVRKAQMINPARAQKLNRFIVNDHFEKVRILMENLNIQQRPECIYNMDMRCSDYFVLFFFMK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00664777;
90% Identity
-
80% Identity
-