Pros034871.1
Basic Information
- Insect
- Platycheirus rosarum
- Gene Symbol
- -
- Assembly
- GCA_963971375.1
- Location
- OZ020509.1:8784157-8784825[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.7e-11 7.2e-08 33.6 0.0 1 37 13 48 13 56 0.90 2 2 2.8 2.7e+03 -0.2 0.0 16 23 128 135 125 137 0.86
Sequence Information
- Coding Sequence
- ATGTCAACAGTTTCCAAGAAGAGATCTGTTAATTGGACAGAAGCTGAAATGAATAATGCTTTGAAAGCTGTGGAACGCGGTTTGACACAGCGAGAAGCTTCCAAGCGCTTCAACATTCCACGCAGGACTTTGAGGAACCACATCTGCAGTGGTTCTACTAAAAAGAAACTGGGACGTTCTTCAACACTCACAGCCGAACCAGAAACTGATCTGTGCCAAAGGATCGTGAGGCTCTCTCAGGTTGGCATGTCACTCACGCCAAAAATGCTTAGATACCAAGCGGCCGTCTTTTGTAACTTAAACAATATTCCGAATAAGTCTTGCAATTCGGAAAATGGTGCTGGGAGAAAGTGGCTGCGGTTATTTATGAGACGTCACCCGAAATTATCCGTACGCAAGGCTCAGATGATCAATCCAGCTAGGGCCCAAAAACTAAACAGGTTTATTGTCAATGATCACTTCGAAAAAATCAGGATCCTGATGGAAAATCTGAACATCCAACAAAGACCAGAGTGCATTTACAACATGGACGAGAAAAGCTGCAGAATTTCACTCCACCACCAACAAAAAGTCATAGCTCTAAAAGGTTCAAAGAGAGTGCATCAAATTTCAAACGAGCACGCCGAAAGTGTGACCATTGTTGGATGTGTCaatgcaataaataaataa
- Protein Sequence
- MSTVSKKRSVNWTEAEMNNALKAVERGLTQREASKRFNIPRRTLRNHICSGSTKKKLGRSSTLTAEPETDLCQRIVRLSQVGMSLTPKMLRYQAAVFCNLNNIPNKSCNSENGAGRKWLRLFMRRHPKLSVRKAQMINPARAQKLNRFIVNDHFEKIRILMENLNIQQRPECIYNMDEKSCRISLHHQQKVIALKGSKRVHQISNEHAESVTIVGCVNAINK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00664777;
- 90% Identity
- iTF_01211853;
- 80% Identity
- -