Pros026911.1
Basic Information
- Insect
- Platycheirus rosarum
- Gene Symbol
- Clic
- Assembly
- GCA_963971375.1
- Location
- OZ020508.1:33403358-33415011[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.3e-10 4.1e-07 31.2 0.0 6 44 109 148 106 149 0.93 2 2 9.2e-08 8.7e-05 23.7 0.0 3 39 216 252 215 257 0.87
Sequence Information
- Coding Sequence
- ATGCCCATAACACCACTGCAACTACCTGCGCTACCAATTGAATCCGCACAAAATGAGTATGTATTATTCGAATTAAAATGTGATAATCCGCCGTCGTACAGCTACGTTATCACACATGCCAAGGAACCGCCGCCTGATATCTCAAATCCAATCAATGAAAAAGAGCCTACCACATGTATGGAGCCCAGTGTTACGGAAATAATAGCAAACCCAGAACCATACGTAATCAGCGTTGATATACCAGTGAcatgttatcaaaaaaaaagttcttgcaCGGAGAACTCACATAAAACAAGACGTTCTTTAGCTTACCAAAAAAATGTAGCAGCAGCAGTCGATGATGTAGTCAATAAAGGTATGAGCATTAACAAAGCTGCCAAAAACCATGAAGTAACAAAGAGCTACTTATGGAAAGAGGTCAACAAACAAACTAATAGTCGGATGAAAAAGGTCgacaaaaatcttaataaaCAAATCGATGATCGCATTTGTGCAGGTGAATCTCTGTCAGGCATTGCGAGAACTTTAAAGATGTCTAAATCCACGATACACATGCACAAAGTTCGACTAGCACAAAAAGGTAAACTTCCGCCGAATATTACCTTTAAACCACCTACGAATAAAGCTGACCAACTTGTTATGAAGGAGCGCATCATTCAGGCTTTTCGTGGCATTCGGGTGAATGGCATGTCGATACGTTTTGCAGCGAAGTTTTTTTCAGTTCCACCATCAACGCTTTCGAAGCACATTAGGAGATTTAGAGCGACTCAAAAGAAACAAGCGGCATACATAGAATCTACCTCGGAGGAGGATACTAGTGATGAAGATAAAGTCCTACCTAAAGAAAAAAGTGAAGATGTGCCAGCAGTAAATGCTATCAAAACAACTAAAGGGGTAGACGCAGATGACTTTAAAATACTTAATGCCTATTGTGATCAACAAACCGAAGGTCCAAACAATGAGGAGTTTCTAATAAGTTTTGACTATGACACTTTCGAAGAATATGTAAAGAGAGAGgCATCCACAATCGATGGAAGACGCAAGGGAGCTTGCCTTTTTTGCCAAGAATATTTCATGGATTTGTACCTGCTAGCTGAATTGAAAACAATAAGTTTAAAGGTCACAACAGTTGATATGCAAAAACCTCCACCAGATTTTCGCACCAATTTTGAGGCAACACATCCGCCAATCCTCATTGACAATGGTCTAGCAATTTTGGAAAATGACAAAATCGAAAGGCATATCATGAAGAACATCCCCGGTGGATACAATCTCTTCGTACAGGACAAAGAAGTTGCCACCCTGATTGAAAATCTCTATTCAAAATTGAAGCTTATGTTGgtcaaaaaagatgaaaacaaaaacaacgccTTATTGTCacatttgaagaaaatcaacGATCATTTGGCATCACGTGGAACACGTTTCTTGACCGGCGATACTATGTGTTGTTTTGATTGTGAACTGATGCCAAGGTTACAACACATTCGAGTGGCTGGAAAGTATTTTGTCGATTTTGAAATACCCACTCACCTGTCATCCTTGTGGCGTTACATGTATCACATGTATCAGTTAGATGCCTTCACACAATCGTGTCCAGCTGATCAGGATATTATCAATCATTATAAACTGCAACAGATGCTCAAAATGAAGAAGCACGAGGAATTGGAGACACCAACATTCACAACGTCTATTCCGATTGATATTTCAGAATAA
- Protein Sequence
- MPITPLQLPALPIESAQNEYVLFELKCDNPPSYSYVITHAKEPPPDISNPINEKEPTTCMEPSVTEIIANPEPYVISVDIPVTCYQKKSSCTENSHKTRRSLAYQKNVAAAVDDVVNKGMSINKAAKNHEVTKSYLWKEVNKQTNSRMKKVDKNLNKQIDDRICAGESLSGIARTLKMSKSTIHMHKVRLAQKGKLPPNITFKPPTNKADQLVMKERIIQAFRGIRVNGMSIRFAAKFFSVPPSTLSKHIRRFRATQKKQAAYIESTSEEDTSDEDKVLPKEKSEDVPAVNAIKTTKGVDADDFKILNAYCDQQTEGPNNEEFLISFDYDTFEEYVKREASTIDGRRKGACLFCQEYFMDLYLLAELKTISLKVTTVDMQKPPPDFRTNFEATHPPILIDNGLAILENDKIERHIMKNIPGGYNLFVQDKEVATLIENLYSKLKLMLVKKDENKNNALLSHLKKINDHLASRGTRFLTGDTMCCFDCELMPRLQHIRVAGKYFVDFEIPTHLSSLWRYMYHMYQLDAFTQSCPADQDIINHYKLQQMLKMKKHEELETPTFTTSIPIDISE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -