Pros022833.1
Basic Information
- Insect
- Platycheirus rosarum
- Gene Symbol
- -
- Assembly
- GCA_963971375.1
- Location
- OZ020507.1:255977087-255978643[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.3e-13 1.2e-10 42.5 0.0 3 43 295 335 293 337 0.91 2 3 0.041 38 5.7 0.0 27 37 366 376 360 381 0.87 3 3 1.9e-15 1.8e-12 48.3 0.0 2 41 403 442 402 444 0.92
Sequence Information
- Coding Sequence
- ATGAATCACCTTAAATGGATGGGCCATATGGCGACCATACTTGACATCCAAAAGGCTCTCAAAAATGACCCAACAACTTGCGACATTACACTCGCGTGCCGAGGCAAATCAGTAAAGGCTAATCGTTTTGTATTGTGCTCTTGTAGTGATCTATTGAGAGATCTTCTTAACGATGTACCCATTGGACATGAAGCCACCATTGTTATACCTGATATTAAAGGTACACTCCTCGACAGTGTGCTAAGTTTCATTTATATGGGCGAGACGAGTCTATCGTCGACAAATCTCTCTGATTTTCTCGAGGCAATCAATGTTCTGGGAATCAAGAGTGCTATTAGTTTCGAATGTGCAACCAGTTATTCTTCCAACAACGTCAAGGCGGTATCGGAAATCGCCGAGATGGAAGAGGAACTTATGGAAGCTGAACCGGACCAGGAAATTGTTGAAAAGGACGAAGAAGAGgATCAAGCAGGTGCAGCAGACAGCAGTGTGCGTGAGCTTGAATTTCTTGAAGTGTACAGTGAACATGACAAGATCAGTTACACCATCGAGAACATAACCCCAAACAATCCAAGCGAATACATTCTAACAGAAAACTCAGGCACTTTTACTCTGACACCGAATGCAAAAATAGACACAACAGATGTGAGTGAACTGGTTGAAAAAAACGACGATGAATCGCATCTAATAGAACAATACGTAAACGATCCCATAGGCGACAGTAGTCATTGTTCAAGTGTTGACCAAAAAGACGTTAAACAGTGCAAGAAACTGAAAGATGAATTTAGTGAATTTCAAGCTCTCAGTCCGGATGACCATAAGGATCTATCGAAGGTAACAGCCAGCTATCAAAACTTCAGCGAAACACAATCCGCCCGAGTTGAAGCATTAGAAAATGCGGTCTTGGCTGTGGTGGATGAAGGCATGAGTTTGCAAAAAGCCGCCGTTAAGTTTAATATATCCAAAACAGTCTTGTGGCGTAGAGTTAAAAAACATCCACTTTATATGAAAACAGCTCGTGAGAATCCACTCATAACGGCGgcatgtgaacgtctcaagacCGGTGATTCATTGAAAAGTATAAGTCAAGCACTAGACATACCGATGTCAACTCTACATCGACATAAAGTCAGACTAGCCCAGGAAGGCAGGCTACCAGATTATGTGACATTCAAAAAACGAGGTCCATTGTCCAAGGAAGTACTGAGAGCGAAACTCAATAAGGCAGTGAGCGCCTGTTTGGGCAACGGAATGTCTCAAAATCATGCGGCGAATGTGTTCAATGTGCCAAAGAGCACGCTCTGGAGACATTTGCAGAAGAAAATGTGTCGCACCACTGATGACTCTAGTGTATGCATTAAGGAGGAAATTGTTTTGCCAGAAAATTGA
- Protein Sequence
- MNHLKWMGHMATILDIQKALKNDPTTCDITLACRGKSVKANRFVLCSCSDLLRDLLNDVPIGHEATIVIPDIKGTLLDSVLSFIYMGETSLSSTNLSDFLEAINVLGIKSAISFECATSYSSNNVKAVSEIAEMEEELMEAEPDQEIVEKDEEEDQAGAADSSVRELEFLEVYSEHDKISYTIENITPNNPSEYILTENSGTFTLTPNAKIDTTDVSELVEKNDDESHLIEQYVNDPIGDSSHCSSVDQKDVKQCKKLKDEFSEFQALSPDDHKDLSKVTASYQNFSETQSARVEALENAVLAVVDEGMSLQKAAVKFNISKTVLWRRVKKHPLYMKTARENPLITAACERLKTGDSLKSISQALDIPMSTLHRHKVRLAQEGRLPDYVTFKKRGPLSKEVLRAKLNKAVSACLGNGMSQNHAANVFNVPKSTLWRHLQKKMCRTTDDSSVCIKEEIVLPEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00311727;
- 90% Identity
- iTF_01212135;
- 80% Identity
- iTF_01212135;