Pign169063.1
Basic Information
- Insect
- Platerodrilus igneus
- Gene Symbol
- -
- Assembly
- GCA_036346225.1
- Location
- JARFIW010001609.1:4675644-4688379[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.013 7.1 10.6 1.3 2 23 314 336 313 336 0.91 2 12 6.3e-06 0.0034 21.0 0.1 1 23 578 600 578 600 0.98 3 12 2.1 1.2e+03 3.6 1.0 1 19 622 640 622 645 0.80 4 12 0.48 2.6e+02 5.7 3.0 2 22 652 672 651 672 0.93 5 12 0.0044 2.4 12.1 4.2 1 23 690 713 690 713 0.97 6 12 5e-05 0.027 18.2 1.9 2 23 927 948 926 948 0.97 7 12 0.43 2.3e+02 5.9 5.9 6 23 1026 1044 1021 1044 0.94 8 12 0.0022 1.2 13.1 6.2 1 20 1310 1329 1310 1332 0.95 9 12 2.9 1.6e+03 3.2 2.8 1 23 1338 1363 1338 1363 0.96 10 12 1 5.5e+02 4.7 1.1 1 19 1407 1425 1407 1427 0.95 11 12 1.3 7.1e+02 4.3 0.3 2 21 1480 1499 1479 1503 0.87 12 12 0.00039 0.21 15.4 6.0 1 23 1571 1594 1571 1595 0.97
Sequence Information
- Coding Sequence
- ATGTACATTGACGACGAAATTGAACGCAATACGCCATTAAGCCAATCTATCATAAAGGAAAAAGCTAGAAGAATTTTTCATTACATTCAGGCTGAGGCAAATGACATAGGTGAAACTTTAGTTGCTAGTCGAGGAAGGTTTAATAGATTTAAACATCAAAATAATCTTCACAACATTAAGATTAAAGGAGAAGCAGCAAGTGGTTCTACGAAAGCGGCGGCTGAATTCCCAaaactCAACGATACCAATATGTACATCTGCACGTCATGTTTTATTGCGCTTCGAACAGCCTATGAATTTAAGAAGATGTGTCAAGCAACAGAAAAGAGATTCGTAACTCATAACTACAAATATCGTAGACCTTTTGGAGTGGGTCCTGGTAGTCCACAATTTCATGTGACACTTAATGAAAGTGTTAGATCCGAACCAATTACATCTGcgaacattaataataatattttttgtagtgATAAGTTACATTATTTACAAGCTGACACAAGTATTGATATTACAGAGCATCACCTATATGATTCTAATACTGCAGTACGCAGAGTAAATTATAATGACTATGAAACTGAGAAACTACCCGAAATTAATGAAGATCTTAGAACCCAGAATAGTGACAGTCAGAAGAAAGCTTTAAATTCACAAGAACTGAAGGAAAAGTTCAATCTTGGCAGCCAAATTAGTATTTTGCAAACTGAGAAGAGCAAACCTCTTGCTAAATCCagaaatgatgatgatttaatcaAATTAGCATGTGAAGAAGATccatatttaaaagtgaataattTAGGCCCTGAAGCTTTTCGTTGCCATGTACAGATCGAGGTCCTTACACATAACTATGTTCGCTTAAATACAGTAGATAAATTGTCCTTAGATGATATAAAATCAATGTCCCATAcgtattattttgaaaaatcagaGGAAGCAATCTCATGTCAGTTTTGTACTAAAACATTCGTTGATCGTTTTTCATTTCAAATGCATCAATACGAGGAACATACTGTTCATATAGAGGCTGAAAATGTTGAGATCAGAGAGGAAGAAAGAACAAACGTGAACATCATAGAAGAAGCAGTTGAAAAGCCAGGCGGTATAGATGAACAAAAAGAAGACATGAacatcatagaagaagaaaaagtAGCAGTGAAAATTGTGGaagaaaacgaaataaaaatTACGGAAGGACCAAAAGAAGATGCAAAAATCATAGAAGAAAAAAGTCAAGACACAACAGTAATAGAAGATAATGAAGAAAATGTTGAATTTATCGACGATGACCATGAGAATGTGGACattatagaagaagaaaaagaagatcTTGAAACTACAGAAGCAGAAACAAATAGTGGGAAAATCCTAGAAGGAAATGAAGATGTGGAGGTTATAGAGGAACTGCAAGAAAAAGTAGAAatggaaaaagaaattgaaatggaaAATGAAAAAGAGAAAGAGGAAAAATCGTTCACATCTTTTAAACTACTACTTTGTAAAGTAGTTTCAGACAAAAAGAAAAGAATGATGTTTCCACTACGTAGGTATAAAAAATGCTGCATATGCGGCAAAGTTTGTGTAAGTCGCTTGCAATTACTACAACATTGCAGGTTTAAACATGTGGTAAATTATGATTGCATAGAAATAGTAATCAAAGAGATTACAAATTCTAATGTATCACAATATGTTCGTAAATTACGAACCAGAACTGGACATCCATTTGTATCATCTTTTCGTTGCAGTATATGTGATAAGGGTTTTGTGGATCAAAGTGAATTAGATGTTCATATGTATGTGCATactcctattgttttacaaatggaTGATTCTAATGACTCAAAAGATGAGGAATCTGAGTATCAGTTTAAATGTTATTTGTGTGGTAAAGGTTTTCTTAAGGAACGTTTTCTTAAATTGCATAATGTTCAAATGCATCTTCGTAATAAACCTACCACTTGTAAAAACTGTTTAAGAGTTTTTAAAAGTGAGTTTTGGTATGAAAGGCATAAGTGTACATTACCTCCTGAAGAAACCACTCCAGATGAATTGCCAGATGAGACCAACATGTTTTCATGCAATTTTTGTGATCGCAAGTTTTCACAGTTGCGTTTTATGAAGGTACATCGACGTCGTTCTCATAAACTTCTTATGAACTCTCGAGGTCCTGCAGATAAAAATGCTGCCGAATCACCTGTGTTAGATAATACAAAAGATGTCGATCCTATGGATTTATATTCGATTGCTGGTACTTCATCATTTGCCGATGATACTGCGGATGACGAAAGCGAATCTGATAGTGATACCTTTTCAGACATAGAAGATTTTATTGAACCTATTATAGAAAAAACCAAAGAAGAGGAAAGTGCCGTTCAACTCAAACCTGTGAAGATTGAGCAAGCAATTCCTGTCATTCGTAAAACTGAACAAATCAAACCTGTAAAGATTGAGCAAGCAATTCCTGTCATTCCTAAAACTGAACAAAAGCCAATTAAACATGAACCACCGCCTGAAGTGGCTCCAGAAACAACCGTACGCCGTGGTCGTCCAGTGGTTATTAAGGATATTAAACCACTTTCTGAAATGCCAGAGATAGAACCTGCTCATGGTCGTAGAGGTAATCGTGGGTTACCTAAAATTCAATGTGATTTTTGTGGTGAATTATTTGAAGAAAACCGTTATGACAAACACATTGCCGAACATAATAAATCTCGCCTGCAAAGACGTGTAAGCACAACTACAACACATATAGAGGAATACGACAGTGATGATTTACCTCTGAAATGTCCTGTTTGTTATAAAGGGTTTAAGCGAAAGTACTACTACAATACTCATATTAATAAGCACATCGAAGAAGGTATCGATGTTCTTGAAGAAGAACCAACTTCGCCTAGTTTAGATAATCATACACCTCCTACTCCCACTCCCTCACAACCACCAACAGAGTACCAAGCTGAATCCGAAGATGAAGCATGTGACGAATCATATATAAGTGAAACTGAAGCTGCTCTTCTTGAAGAAGATGATATTCAAGGTGAAGAAATAATCCTTGAAgataatacaaaatgttatgtcTGTTGCGGACGTTCATTTAGGCTTAAAGCCCATTTTTTCCGTCATTATAAAATGAAACATCCTAATAATCTTAAGAAAAAAGATCCTATTAAATATCCTGAATCATCTGAGCCCTCCATATCTCCTGTGCAATCGGAACTTGAACAAATCAATGTTCCAGACATTACTGATGTTAAGAATGTTAAGAAAAGAGATTCTATTCAATATGTTGAAAAATCTGAAGCACTCACATTTCCTGTGAATAGCCAATTTGAACAAAttgatgttaaaaatgttttgaacaTGGTCAATtgtaagaaaattaagaaaagaaattctattaaatatattgaaaaacAAGAATCTGAAGCACTCGATGAGAAAAATATTCTGAATTTTGTTGATATTAAGAATGTTAAGAAGAGAGATCCTATTAAATATGGCAAAACTTCTAATACATTTATATCTCCTGTACAAACCGAACTTATCTATGCCAATGTTAAGAGAGGCTGTAGCATTATCGATGTAAAACATATTCAAAATCTTCCTGATGTTACAATAACAAAAAGTTCTGTTGATACTAAAAATTTTTCTCCAAACTTTGCtgatactaaaaaatatttttccaatgctgaaaatatttgtgaaacaattactaatattaaattagaacCCAATCTTCCAaacgatttagaaatcggttTAAAAGAAGATatggaattaaataaagtaaagcgCAGACTTAGCGAAGTTGAAATTGAAAGTGTAAAAAAAGTAAAGACTGAAAATGCCGAAGCTGTTAAGTTAAGAAACACAGTGGCAGCTCACTTGGATGATATTGAAATAGTTGCCGTGTCTCCTACACCTAGTTTTAAATACGAGTGTTTGCAATGCCCTAAAAAGTTCAAGCAAAAATCACAACTGCGTGATCATCAACATTGTCATTCTGGTGAGAACCCTTACAAATGTGAATTTTGTGAACCGTCACATAATTTTACTCAATCGTCTTCGTTATACTTTCATATTCGAAAAGTGCATACAGCAGTTATGAAAAATGTCTCGTGGGCGATTCAATCCAAAAGTGGTTTATGCCTTATATGTCTTGAAGGATTTGAGAAACATATGACGATGTACAAGCATTTACGTGAAAACTATGTTGAAAATGGCTTTGAATGTGAAATGTGTTCAAAAACAGTTGCAATGAGTTGCCATTACAAAGTTCATAATATCGAGCCAAACGATATGGATAGTTTTATGCTGCCCCAACAAAATTTAGAAGTGCTTTTAATGGAAGATGCCGAGAGCCGTCCTTCATCTTCCATAAGTAATAATGAAGAAGCTGATGAAGATTTAAATGAAGCCGATAATATAATGAGCAAGGCAAAACGTTGTGAGCCTTGTGGGAAAATATTTAAGTCTATACAGTATTATAATTTGCACAGTAGAGGTTTAGTCCACAAACAAAACGTTGAGTCTTTTGGTTACAGAGATGAAGACATTGAGAACTGTCAATCTGAAGAGGATTTAAACCAGAAAGCAGATTATGAAGCGAATGAAGTGAATACTACTAGCGAAATTGAAAATCCAGACATGGAAACAATTAAGGAAATTGAAGATAATTGCAAAGCAATTACAAAGAAAATACAAAGAATTGGTACTTTTAAGTGTCCTTTGtgtgatttattatttattacaagaACTCATTTGCGAAAGCATAGAAGAACAAAGCATCATGTTACACATGCGATGCATGAAAAGAAACGTCGAAAAGTTGAGAAAACAGTCGAAGAGGATTACAATACAGCTGTAAAAGATATTATAGATCAAGATGTAACTCTAAATGAAATCGCTGAACATATAATGGACAAGGATGATAATAGCATGAATGATAATGGTTGCTCtgaatcaaatattagtataaatCAAGAGGacgttgacatttttaataaagatgAAAATACAGATTCAGTTCCAGATACACATAGCATTGATGAGCAAGCACATAACATAGAAGAGCTGCAAACAACAGACAAAGGTGTTGTGAACCAAACAGAAGAAGCACTTCCCAATTTAAAAGACGATGCTAGAATTGATACATTAATAGAAGAACCAATATCTAAAACACATGTTGATAGTAGCAATGTTGTAGTTGATCCCATACTAGCTATCATTAAAGTTGAagaaatcccttcattaaatgtagaagaaattataaatcCCAAAACTAAAGACCCTTTCTTATATGACAAATTAGATGAACTATTGAATAAAAGTAATAATGTTGTAAAAAATGAAATCGAAAATAACTTACCTAGTTCGAAATTTGAGCAAGTTTTGCCAGAATGTCCAAAAACTTCAATTCCCACAAAAATAGCAACTGAAAAAGACACTAGGGATGAGCCAAATGACACGGAAAAAACAAAAACTGCAACCATTGAAGTGCCAATTCACTTACCAGAATCTATAACTTTAAACATGGTTAAGAAAGTGAATGAATCTAACAAAACAACTGAAAAACATGAAACAGCACCTAAATATGAAAAGAGGCTTGAACGTAAGCGTGCCGCCAGCGAACATACAGAAACTACAAGAAAATGCAAAACTATTCCCAACATTTCTTTGAGCGTGTTGCCCAGGTCTATCCAAAATGAACAATTTGTACAAAACAGTTCAGCAATAATGCGACATTTGGCTGTCACTACTCCAGTTCCACAACATCTATATTCGAATCAACATTTGTTAGAAAACAAACGAGACTTACccttatcacaaaaatattatcGAGGTGAACAATTCATTTCACCACCACCACTTCTTCATTATCGTCCCATGCTGGAGCGTCGCTTATCACAACCTTTTCCTGATTATCCTACAATTACACAGATTCATCCTTCAAATTATTTTACTCCACCTCAACCACAGTCACACTCCACTTTTATGTCAAGTCCAAGAGTATCACAAAGTAATAAATTAGGGCCATATTTGGAACAAGGCTTTGTAATACAAGATGATGACGTATTGGATAAAAGTTTAGTTGAACCTGATATAAACCCAGATCAAGAACTTTTATCCCTTTTACGTAATAGTGACAGTTCTGTGTACGAAATAAAGAAGTCTGATAGTTCCTTTGATTCCGAGCAAGAATTTATAGATCTTGAAGCAGCTGGCCCTAAAATTCTTAAGCAAAGTCTTGAACGTGCTAAAGCCGAGGAAATCAGAAATATTGGTAATGCTGACAGTAGCAAACCGGATTCTTATaaattatatagaaaaaaaatagcaaatactGAGAAAGTTAGTTTAAGTAAATCCAATGAGCCTGTGGATTTCCAAAGTGGACTTCCAACATCATGTACTATTTTAAATGATATAAGACATAATTTTAGTTAA
- Protein Sequence
- MYIDDEIERNTPLSQSIIKEKARRIFHYIQAEANDIGETLVASRGRFNRFKHQNNLHNIKIKGEAASGSTKAAAEFPKLNDTNMYICTSCFIALRTAYEFKKMCQATEKRFVTHNYKYRRPFGVGPGSPQFHVTLNESVRSEPITSANINNNIFCSDKLHYLQADTSIDITEHHLYDSNTAVRRVNYNDYETEKLPEINEDLRTQNSDSQKKALNSQELKEKFNLGSQISILQTEKSKPLAKSRNDDDLIKLACEEDPYLKVNNLGPEAFRCHVQIEVLTHNYVRLNTVDKLSLDDIKSMSHTYYFEKSEEAISCQFCTKTFVDRFSFQMHQYEEHTVHIEAENVEIREEERTNVNIIEEAVEKPGGIDEQKEDMNIIEEEKVAVKIVEENEIKITEGPKEDAKIIEEKSQDTTVIEDNEENVEFIDDDHENVDIIEEEKEDLETTEAETNSGKILEGNEDVEVIEELQEKVEMEKEIEMENEKEKEEKSFTSFKLLLCKVVSDKKKRMMFPLRRYKKCCICGKVCVSRLQLLQHCRFKHVVNYDCIEIVIKEITNSNVSQYVRKLRTRTGHPFVSSFRCSICDKGFVDQSELDVHMYVHTPIVLQMDDSNDSKDEESEYQFKCYLCGKGFLKERFLKLHNVQMHLRNKPTTCKNCLRVFKSEFWYERHKCTLPPEETTPDELPDETNMFSCNFCDRKFSQLRFMKVHRRRSHKLLMNSRGPADKNAAESPVLDNTKDVDPMDLYSIAGTSSFADDTADDESESDSDTFSDIEDFIEPIIEKTKEEESAVQLKPVKIEQAIPVIRKTEQIKPVKIEQAIPVIPKTEQKPIKHEPPPEVAPETTVRRGRPVVIKDIKPLSEMPEIEPAHGRRGNRGLPKIQCDFCGELFEENRYDKHIAEHNKSRLQRRVSTTTTHIEEYDSDDLPLKCPVCYKGFKRKYYYNTHINKHIEEGIDVLEEEPTSPSLDNHTPPTPTPSQPPTEYQAESEDEACDESYISETEAALLEEDDIQGEEIILEDNTKCYVCCGRSFRLKAHFFRHYKMKHPNNLKKKDPIKYPESSEPSISPVQSELEQINVPDITDVKNVKKRDSIQYVEKSEALTFPVNSQFEQIDVKNVLNMVNCKKIKKRNSIKYIEKQESEALDEKNILNFVDIKNVKKRDPIKYGKTSNTFISPVQTELIYANVKRGCSIIDVKHIQNLPDVTITKSSVDTKNFSPNFADTKKYFSNAENICETITNIKLEPNLPNDLEIGLKEDMELNKVKRRLSEVEIESVKKVKTENAEAVKLRNTVAAHLDDIEIVAVSPTPSFKYECLQCPKKFKQKSQLRDHQHCHSGENPYKCEFCEPSHNFTQSSSLYFHIRKVHTAVMKNVSWAIQSKSGLCLICLEGFEKHMTMYKHLRENYVENGFECEMCSKTVAMSCHYKVHNIEPNDMDSFMLPQQNLEVLLMEDAESRPSSSISNNEEADEDLNEADNIMSKAKRCEPCGKIFKSIQYYNLHSRGLVHKQNVESFGYRDEDIENCQSEEDLNQKADYEANEVNTTSEIENPDMETIKEIEDNCKAITKKIQRIGTFKCPLCDLLFITRTHLRKHRRTKHHVTHAMHEKKRRKVEKTVEEDYNTAVKDIIDQDVTLNEIAEHIMDKDDNSMNDNGCSESNISINQEDVDIFNKDENTDSVPDTHSIDEQAHNIEELQTTDKGVVNQTEEALPNLKDDARIDTLIEEPISKTHVDSSNVVVDPILAIIKVEEIPSLNVEEIINPKTKDPFLYDKLDELLNKSNNVVKNEIENNLPSSKFEQVLPECPKTSIPTKIATEKDTRDEPNDTEKTKTATIEVPIHLPESITLNMVKKVNESNKTTEKHETAPKYEKRLERKRAASEHTETTRKCKTIPNISLSVLPRSIQNEQFVQNSSAIMRHLAVTTPVPQHLYSNQHLLENKRDLPLSQKYYRGEQFISPPPLLHYRPMLERRLSQPFPDYPTITQIHPSNYFTPPQPQSHSTFMSSPRVSQSNKLGPYLEQGFVIQDDDVLDKSLVEPDINPDQELLSLLRNSDSSVYEIKKSDSSFDSEQEFIDLEAAGPKILKQSLERAKAEEIRNIGNADSSKPDSYKLYRKKIANTEKVSLSKSNEPVDFQSGLPTSCTILNDIRHNFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -