Basic Information

Insect: Platerodrilus igneus
Gene Symbol: -
Assembly: GCA_036346225.1
Location: JARFIW010000796.1:4131617-4133722[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.016 8.7 10.3 2.2 1 23 227 250 227 250 0.94

2 14 0.056 31 8.6 3.1 1 23 256 278 256 278 0.96

3 14 2.6 1.4e+03 3.4 6.0 1 23 314 336 314 336 0.98

4 14 1.4 7.7e+02 4.2 1.6 1 23 366 389 366 389 0.89

5 14 0.029 16 9.5 0.3 1 23 396 419 396 419 0.94

6 14 0.4 2.1e+02 6.0 5.5 2 23 426 447 425 447 0.96

7 14 0.0071 3.8 11.5 0.9 3 23 455 475 454 475 0.98

8 14 0.00082 0.44 14.4 0.2 1 23 481 503 481 503 0.98

9 14 0.0052 2.8 11.9 2.5 1 23 509 531 509 531 0.98

10 14 0.00016 0.086 16.6 4.6 3 23 539 559 537 559 0.97

11 14 0.00027 0.15 15.9 3.1 1 23 566 588 566 588 0.95

12 14 1.7 9.1e+02 4.0 5.6 1 23 593 615 593 615 0.97

13 14 1.2 6.8e+02 4.4 1.9 3 21 623 641 621 642 0.92

14 14 0.028 15 9.6 1.3 2 21 656 675 655 676 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.016	8.7	10.3	2.2	1	23	227	250	227	250	0.94
2	14	0.056	31	8.6	3.1	1	23	256	278	256	278	0.96
3	14	2.6	1.4e+03	3.4	6.0	1	23	314	336	314	336	0.98
4	14	1.4	7.7e+02	4.2	1.6	1	23	366	389	366	389	0.89
5	14	0.029	16	9.5	0.3	1	23	396	419	396	419	0.94
6	14	0.4	2.1e+02	6.0	5.5	2	23	426	447	425	447	0.96
7	14	0.0071	3.8	11.5	0.9	3	23	455	475	454	475	0.98
8	14	0.00082	0.44	14.4	0.2	1	23	481	503	481	503	0.98
9	14	0.0052	2.8	11.9	2.5	1	23	509	531	509	531	0.98
10	14	0.00016	0.086	16.6	4.6	3	23	539	559	537	559	0.97
11	14	0.00027	0.15	15.9	3.1	1	23	566	588	566	588	0.95
12	14	1.7	9.1e+02	4.0	5.6	1	23	593	615	593	615	0.97
13	14	1.2	6.8e+02	4.4	1.9	3	21	623	641	621	642	0.92
14	14	0.028	15	9.6	1.3	2	21	656	675	655	676	0.93

Sequence Information

Coding Sequence: ATGCACCAGTTTATTCctgattatttaaatacaaatcttGTTCCTAAATTGGAAGACGTTGCCAAGTCCACACTGTTAGAAGATTCAAGTAAACCTTTAGATAGCACAaagaattcaaaagaaatattgCCAAGAATTAAAAACGAAGATGTATTGCAAAATGAAACTATTCAGACTAGGAAGGAGTGTTCTTTTAACCAGGAAGAGCAGTTGCCCAAGGATCGTAAAAGTACCTTACTGTCAATTTTATTAAGTAAATCTAATCCTAAAGAATCTTCAAGACCTCGGTTTCAGAGTGAGTTTGTAACACAAACTGTTTGTGTGGATCCTGCAGTTTCTTATAGAGAACAATCTTCAAACTTTGAATGTGGTTGTCAACATTTTAAATGTGCATCAGCCACAAAAATCCTTGAACATTTAAAACAAGAGCACAATCATAAGGATTTACACtgtttttgttgtaattattctacaaaTGAAAGCAAGAAGATGAACGAGCACATAGAACTTCATCTAAAAGATCCCAACTTAATTGAGATAATTCAATCAAGAGGTATTTCAAGTTTGTCAAAGGTAACTGAAGAAAGTAAACCATTTCAATGCCTTATCTGCAGATTTTCTGAAAATGCTGTTCAAGATTTAAAAAAGCATTATTTTTCAATGCATATTGTGAAACTTTTCGTTTGTGTAACTTGCAACAAAAGATTTCACTTCCTTAATGGTTTAGAAAAGCATGTAAAGGATAcccatatttcaaatattttttataattgtttcCATTGTTCATTTTCTTCCAAAACTGAAAGTGAGTTTCAACTGCATATAACTGGTCATGTATCTGAATTAAAGAAAAAACCTAGGAATGCGATTACTTCACAAAATTGTCCCCAAGTTGTCAAAAATAAGGATTCCTTAAATATTCTGGAATTACCAAATCTCTATAAATGTTTACACTGTTCCTTCTACAGTAtccataaaaataattttttacttcaTCTGCAGTTGCATAAGGACTTTTCTTCTGAAGGAAACAATGTTGTATCGCCAAaggaacaaaatattttttttcctgCAGTAGATACTGTAGAGAATTCATATAAATGCAAGTACTGCTCTTTTGCATCATTGTTAAAAAAGAACTTAAAAGAACACGTTGTAAAAACACATGCTGATAAAGAAAAGTATTATCTTTGTAAATTATGCGGCAAGTATTTTGCAGGTCTTCGTAATGGAGAAAAACACATGATAAAGATACATACTGAAAAAACAAAGTTACATTGTATGCATTGTAAATTTTCAACtatatattttagaaatctaGAAACACATATGCAATATCACACTGGTGAACTTTCTCAACTTTGTTATGTTTGTGGTTATAGATCTGTACATTATAGTCAAATGAATGTGCATATTCGTAATCATTTTGGATTAAAGCAATATGCATGCAATGTTTGTGAGTATAAAAGTGCCGATAGGAATTCATTAATAGAACATATGAATAGACATATAACTGAACGATTATTTCCATGCAACCAATGTGATCACCGAGCTAAGACCAAGCGATATTTATTGTTACATCAAGAGACCCATATTGTTAACAAAAATCTTGCATGTAAGTTATGTGACTATAGATGTGTGCGAAACTATCATTTAACTCTACATATGAAAACTCATTCGGTCAACCGAACACCTTTTGAATGCGATAAATGTCAGAAAAAATTTGCTAGCAAACGGTCACTAAAAGAGCATGCACACTTGCATGATGGCATTAAATATCATTGTCGATTTTGTCCTTTTACTTCTAGTAGACTTAACAGCTTACATCTTCATGAGAATCGCCATTCTGAACTTGCTCAAATGCATTGTTTTCAATGTAGTTATATTTCTTCTCACAGAGGAAACTTTACAGAACATGTCAACAAGACTTGCTCTAAAGCCAAACTTAATAAGGAGAATCTGAAATATTGTTATTATTGTGGTTTTTATTCTAGTCATAGATCTAATTTTATTAAGCATGTAAATGAAGGTTGcagtaagttaaaaaaaaataagaaagaaaggGGAAACATCTGCAATCCGTGGTATAGTTATGGTTCCTTTTGA
Protein Sequence: MHQFIPDYLNTNLVPKLEDVAKSTLLEDSSKPLDSTKNSKEILPRIKNEDVLQNETIQTRKECSFNQEEQLPKDRKSTLLSILLSKSNPKESSRPRFQSEFVTQTVCVDPAVSYREQSSNFECGCQHFKCASATKILEHLKQEHNHKDLHCFCCNYSTNESKKMNEHIELHLKDPNLIEIIQSRGISSLSKVTEESKPFQCLICRFSENAVQDLKKHYFSMHIVKLFVCVTCNKRFHFLNGLEKHVKDTHISNIFYNCFHCSFSSKTESEFQLHITGHVSELKKKPRNAITSQNCPQVVKNKDSLNILELPNLYKCLHCSFYSIHKNNFLLHLQLHKDFSSEGNNVVSPKEQNIFFPAVDTVENSYKCKYCSFASLLKKNLKEHVVKTHADKEKYYLCKLCGKYFAGLRNGEKHMIKIHTEKTKLHCMHCKFSTIYFRNLETHMQYHTGELSQLCYVCGYRSVHYSQMNVHIRNHFGLKQYACNVCEYKSADRNSLIEHMNRHITERLFPCNQCDHRAKTKRYLLLHQETHIVNKNLACKLCDYRCVRNYHLTLHMKTHSVNRTPFECDKCQKKFASKRSLKEHAHLHDGIKYHCRFCPFTSSRLNSLHLHENRHSELAQMHCFQCSYISSHRGNFTEHVNKTCSKAKLNKENLKYCYYCGFYSSHRSNFIKHVNEGCSKLKKNKKERGNICNPWYSYGSF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -