Basic Information

Insect: Platerodrilus igneus
Gene Symbol: -
Assembly: GCA_036346225.1
Location: JARFIW010001690.1:2990534-2992258[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.11 62 7.6 0.1 2 23 143 164 142 164 0.96

2 14 0.045 24 8.9 5.0 1 23 222 244 222 244 0.97

3 14 0.88 4.8e+02 4.9 1.0 3 23 252 271 250 271 0.92

4 14 2.4 1.3e+03 3.5 0.1 1 23 276 298 276 298 0.93

5 14 6 3.3e+03 2.2 0.3 1 13 302 314 302 318 0.88

6 14 0.053 29 8.7 3.4 1 23 326 348 326 348 0.97

7 14 0.13 69 7.5 0.3 1 23 352 374 352 374 0.96

8 14 0.45 2.4e+02 5.8 2.4 1 23 379 401 379 401 0.94

9 14 2.4e-07 0.00013 25.5 0.1 1 23 407 429 407 429 0.98

10 14 0.00099 0.54 14.1 0.1 1 23 435 457 435 457 0.98

11 14 1.5 8.1e+02 4.1 0.5 5 23 467 485 464 485 0.88

12 14 0.00049 0.27 15.1 3.7 1 23 491 513 491 513 0.97

13 14 4e-05 0.022 18.5 1.4 3 23 521 541 520 541 0.98

14 14 0.13 72 7.4 0.2 2 21 548 567 547 570 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.11	62	7.6	0.1	2	23	143	164	142	164	0.96
2	14	0.045	24	8.9	5.0	1	23	222	244	222	244	0.97
3	14	0.88	4.8e+02	4.9	1.0	3	23	252	271	250	271	0.92
4	14	2.4	1.3e+03	3.5	0.1	1	23	276	298	276	298	0.93
5	14	6	3.3e+03	2.2	0.3	1	13	302	314	302	318	0.88
6	14	0.053	29	8.7	3.4	1	23	326	348	326	348	0.97
7	14	0.13	69	7.5	0.3	1	23	352	374	352	374	0.96
8	14	0.45	2.4e+02	5.8	2.4	1	23	379	401	379	401	0.94
9	14	2.4e-07	0.00013	25.5	0.1	1	23	407	429	407	429	0.98
10	14	0.00099	0.54	14.1	0.1	1	23	435	457	435	457	0.98
11	14	1.5	8.1e+02	4.1	0.5	5	23	467	485	464	485	0.88
12	14	0.00049	0.27	15.1	3.7	1	23	491	513	491	513	0.97
13	14	4e-05	0.022	18.5	1.4	3	23	521	541	520	541	0.98
14	14	0.13	72	7.4	0.2	2	21	548	567	547	570	0.88

Sequence Information

Coding Sequence: atggATCTGGCTTTATTGAACAGTTCCATGGAATATTCAGATCAAAATGTAGAACAAGAAGTTAAATACAGTGGCAGTCTTCAAATTCCTTCTTGCAGCTCTTCTGAGATGTTCAGCAACAGTGATGAACTACTTTCGTTTATTGGTGacagtaattttaattttcattttatggATACTTTGGATAAACTAAATTCTCCTGTGGTAGATTCTGAGCCAGATATAAGGGATAGTTTATTGGAATTTTTACAAGAACAGCTAAAGTCATCAGACTTaagtaatataaaaaatgattGGATTGATTTTGATAATAATGCCGTAAACACTACCTCATCATTATGTTCTTATCTTTTGCAGGATCTTAAACAATTGGCCAATAATAGCGAAATATCCCACAAACCAATACATACTGGTGGGAAtattcaaaaatgtaatttatgttATTATGTAGCAAATGATGAAACTGATTTGGAAAGTCATGTTGAATCTCATTCTGTACAGGAGTATAATCCTGACCTTTTAATTAAGACCGAACCTTTAGATGTGGTACATGATTCAGAAATGAAGTATATAATTTCTGGTAATCCAAATAGGAATAATAATGTTACTCGGGTTATTTCAATGCCATGTAATACACCTTCTGTAGCTAATGTGAAAAAGGAATTTGATTGCAGAAGATGCAATTACAGTACTGAAaagaaatgtaaattaaaaatacatatgttAACACATATTGGTGGTAAAAACTTGATTTGCTGTGTGTGTGATTATGAGACTGATAGAAGTACATACTTAGTTCATATTAAACAACATAATTGTTCTAGTTTTGAATGCCCATTGTGTTGTGTTACAGTTATAAATGAggcagttttaattaaacacattacgCAACATAGAAATAAATATGCTTGTCCCGTTTGTTATCATTCAACTACTCATAATACACCTGtaacaaaacaagtaataactCAACGTTTTTCTTGCACTGTCTGTagttttcaaacaaaatataaaacgttcctacaaaagcatttattaaaCCATAACAGAATTTTTGAATGTGATTTATGTGATTATAAAGCATCAACTAATAAAATGATAATTGATCATCGTGTGAAACATAGCAGtacatattttaaatgtaaattttgtgactttcaAACTGTTTATAAAACATACATTAAAAAGCATGAAGGCATCCATAATGGAGAAAAAAGATTTGTGTGTCAAGTGTGTGGAATTAGATTTGCTCAAAAAAGTAATTTGAAGGCCCACATTGTTACACATGCGGGTGATAAAAGTTATGAATGTTATTTATGCGATTACAAGGcagcacaaaaaattaatttaaaggcaCATGTTATAACTCATATTGGCGAAACAAATTTGGCTTGTATTGTTTGCAGCTATAAAGCATACAACAGAAATACTTTAAAGACACATATGACATTGCATAATGCCGAGAAAATATTCGATTGTACTTTTTGTAATTATAAATCAGCACACAGAAGTGGTCTGCGGAGACATTTACGAATGCATACAGGAGAGAAAGACTTATTATGCGAAGTGTGTAATTATAAAACTTCCCGAAAAGACTATTTAAATCGACATATGTTAAAACATACAGGCGAGAAGAGTTTGGAATGTAGTTTTTGTGATTACAAAACTGCTTATAGAAACAGCTTAAATGTGCATAATGCATTAATACATTCTAAAGACCTTTAA
Protein Sequence: MDLALLNSSMEYSDQNVEQEVKYSGSLQIPSCSSSEMFSNSDELLSFIGDSNFNFHFMDTLDKLNSPVVDSEPDIRDSLLEFLQEQLKSSDLSNIKNDWIDFDNNAVNTTSSLCSYLLQDLKQLANNSEISHKPIHTGGNIQKCNLCYYVANDETDLESHVESHSVQEYNPDLLIKTEPLDVVHDSEMKYIISGNPNRNNNVTRVISMPCNTPSVANVKKEFDCRRCNYSTEKKCKLKIHMLTHIGGKNLICCVCDYETDRSTYLVHIKQHNCSSFECPLCCVTVINEAVLIKHITQHRNKYACPVCYHSTTHNTPVTKQVITQRFSCTVCSFQTKYKTFLQKHLLNHNRIFECDLCDYKASTNKMIIDHRVKHSSTYFKCKFCDFQTVYKTYIKKHEGIHNGEKRFVCQVCGIRFAQKSNLKAHIVTHAGDKSYECYLCDYKAAQKINLKAHVITHIGETNLACIVCSYKAYNRNTLKTHMTLHNAEKIFDCTFCNYKSAHRSGLRRHLRMHTGEKDLLCEVCNYKTSRKDYLNRHMLKHTGEKSLECSFCDYKTAYRNSLNVHNALIHSKDL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -