Pign102443.1
Basic Information
- Insect
- Platerodrilus igneus
- Gene Symbol
- -
- Assembly
- GCA_036346225.1
- Location
- JARFIW010001103.1:5076301-5077733[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.48 2.6e+02 5.7 0.2 1 23 73 95 73 95 0.92 2 11 0.0011 0.58 14.0 0.6 1 23 99 122 99 122 0.97 3 11 1.8e-05 0.0099 19.6 2.0 1 23 128 150 128 150 0.99 4 11 0.0079 4.3 11.3 2.9 1 23 156 179 156 179 0.91 5 11 4.4e-05 0.024 18.4 0.5 1 23 251 273 251 273 0.98 6 11 0.8 4.3e+02 5.0 8.8 1 23 279 302 279 302 0.98 7 11 1e-05 0.0056 20.4 0.7 1 23 307 329 307 329 0.99 8 11 9.4e-05 0.051 17.4 0.8 1 23 335 357 335 357 0.99 9 11 3.9e-05 0.021 18.6 5.9 1 23 361 383 361 383 0.98 10 11 7.8e-05 0.042 17.6 1.7 1 23 389 411 389 411 0.97 11 11 0.093 51 7.9 0.2 1 17 417 433 417 434 0.93
Sequence Information
- Coding Sequence
- ATGGATAGTTCTTTACAAATAGAAGTCAAGCTTGAGATAGAGGATGAAATTGACCAAATCTGCGATTCAAGCGATGATTATAAAGTTGACGCTTTAGAAATATATGACAAAATAACAGAAGAAGGAATACTTCTATCGAATTATGCCATACCTTCCCTTAACCCGGAACAAAAGTTGCATAAATCTATCACGTACGTAAACACACAGGGAAAAGCCTTTGCTTGTCCCCAATGTAGTAAGGGAATGTTATCGGCAACAAGACTGAAGCAGCACATGCTTGTCCACGACAAGCCATATCAGTGCTATAGCTGCGAATATACAGCAGCACAGAAACATAATTTACAATTACACATAATGGTGGCTCATAAAGATGAAAAGCCATTTAGATGTAATCAGTGTGAGTTTCGAACCGTCCGTAGTAAAAATTTGGAACGTCATATTAATACACATTTAAGGGaagtaaaattttgttgtggGTTCTGTGATTATACAACAACTTCCAATGAAAATTTACaactacattttttattaaaccatACTGATGATAACTTAAGAAAACACAACGAATATTATATGCACGAACAATTTGACTATCGAGGCGATACACAAATGCAAGCTGTTAGTAAACCACCCTCACCCGATTATTCTCCGGCCCATAACTCAATTGAATCTGATTCTAAACCCAACACACAGTCGTGTTATAAGCCTAAAACTAGAAATACACTTAACTTTTATCCGCACAACGTAGGTTTTGAATGTTTCATATGTGGATTCCAAACAAAAGACAAGGGTAATCTACAACTTCACATTTTAAGACATGCTACTGAGAAGCCGTACAGTTGTAGCACTTGCAAATACAAAACATCGCATACTATTTTATTACATAACCACATTAAACGATGCCATTCTGATAAGAAATTCAAATGCAAATTGTGCGATTATCAAGCATCACGCAAAAGTGCCCTTGAAATTCACATACGAAAACATACATGTGAAAGACCGTACGAGTGTGCAACATGTGGAAGAAGAACCATTTCAACCTCTAGACTTAAACAGCACATGCTCACACACTCGAAGCCATTTAAGTGTGATAAATGCGACAAAAAGTTTTCACATAAACAAAACTTGTTGTACCATAAACTATCTCATACCGTTGAATTTCCATTTCATTGTGGAAGATGCGGGTTTCGTACTAAACGATTGGCAAATCTAGAACGTCATATGTTGGTACATACAGGAGAGAAGCCGTTTAGCTGTGATATATGTGACTTTAAGACTGCTCGAAAGTACGCTCTTAAAGCTACATACCTGCAGACATGCATCAGAACACGAAAAATTATTTAG
- Protein Sequence
- MDSSLQIEVKLEIEDEIDQICDSSDDYKVDALEIYDKITEEGILLSNYAIPSLNPEQKLHKSITYVNTQGKAFACPQCSKGMLSATRLKQHMLVHDKPYQCYSCEYTAAQKHNLQLHIMVAHKDEKPFRCNQCEFRTVRSKNLERHINTHLREVKFCCGFCDYTTTSNENLQLHFLLNHTDDNLRKHNEYYMHEQFDYRGDTQMQAVSKPPSPDYSPAHNSIESDSKPNTQSCYKPKTRNTLNFYPHNVGFECFICGFQTKDKGNLQLHILRHATEKPYSCSTCKYKTSHTILLHNHIKRCHSDKKFKCKLCDYQASRKSALEIHIRKHTCERPYECATCGRRTISTSRLKQHMLTHSKPFKCDKCDKKFSHKQNLLYHKLSHTVEFPFHCGRCGFRTKRLANLERHMLVHTGEKPFSCDICDFKTARKYALKATYLQTCIRTRKII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -