Pign061407.1
Basic Information
- Insect
- Platerodrilus igneus
- Gene Symbol
- ZFX
- Assembly
- GCA_036346225.1
- Location
- JARFIW010000782.1:1867560-1881491[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.3 1.2e+03 3.5 0.5 1 19 98 117 98 122 0.86 2 13 0.03 16 9.5 1.2 1 23 129 151 129 151 0.92 3 13 0.0033 1.8 12.5 0.6 1 21 204 224 204 225 0.95 4 13 1.5 8.4e+02 4.1 0.7 1 20 255 274 255 276 0.92 5 13 1.9e-05 0.011 19.5 1.2 3 23 342 363 341 363 0.96 6 13 2.7e-05 0.015 19.1 0.9 1 23 369 391 369 391 0.98 7 13 0.00024 0.13 16.1 2.7 1 23 397 419 397 419 0.96 8 13 4e-05 0.021 18.5 2.4 1 20 425 444 425 445 0.96 9 13 0.00042 0.23 15.3 1.7 1 23 456 478 456 478 0.99 10 13 0.0015 0.8 13.6 4.0 1 23 484 506 484 506 0.97 11 13 0.0072 3.9 11.4 1.5 1 23 512 535 512 535 0.97 12 13 4.8e-05 0.026 18.3 1.0 1 23 549 571 549 571 0.96 13 13 4.6e-06 0.0025 21.5 2.6 1 23 577 600 577 600 0.97
Sequence Information
- Coding Sequence
- ATGGAATCGGTGGTGAAATGTATTGTTTGTTTCAGTAATGAATCTTTTTTAATAAATGCTTGTAATACAGATGCTATGGATATTAAATGGTCCTCCAAGTTAAGGTTATGTGTTCCCGAAGtgGATTGGCTTGATGATTATTTAATATGTAACAAGTGTATACATCAACTGGAAACTGCCTATGAATTTCGAGAACTGTGCTTGAAGTCTTTTGAAATTCGAAAGTATTTAAATAATCTGGACCGTTGCAAAGCTAATGACAATTTGTTAAATACTGCTCTACCTGTAATGTAtcattgtaaaaaatgcttgggaATACCTTTTAAAAACTCTTATGAACTTGCACTGCATAACGTAGATGTTCACTTTATTGTTGATTGTCCATATATTTGTATGTGCTGTGATGAAAACTTCAAATCTAACTTAGAATTAATGCGTCATGAAATTACACATTTTAATTTGAGTTATTGTAAAAATGGCTATAATTCCTATAATGTAGATGTTTTGGAGTTAGACTGTCAACGAATTGTAGACTCTGCTGGTTTGCGATATTCaaaagtaaattatttagaaCATGCTTTAGAAGAAAAGAATAAAAAGGATAGTGCATACAACTGTTACACATGTGGAAAATTATTTAACACCAAAATGCTTTTAGTTACTcacttaaatttttgtaaattactgCGTACAAATCAAGTTGACACTGATATTCCTAAATTATCAGGTAACCTGGATATTAACAACAGATATGATAAAGCCCACAGGTGTAAAGAATGTTTAAGTTTATTTAGCACAGCAAATGAAATAGAAAAGCACTATGATAAATGTGTAGGTATTTATAATCAACAGCTAAAAGTAAATGCAGATGGCTTTCAGGATGACATAGAAGATAATGAGAATATCACTAATATTCAAGATGTTCCAACAATTTCTGTTCCAATTGAGAAAAGGTTGATATCATTCAGGCCCAAGAAACGTGGtcgtaaaaaattggaaaaagtgGATCAAGCATCTAACTTATGTCCAACTTGTGGTATGGTCTTTAATAGTCGATATTTATTGAAACGTCATATATGCAATGTGCATGCAACTGAAAAAAATTTCCAATGTGATTTGTGTGAACAAAAATTTACAAGTCCTGTTTACTTAAATGCACATAAACGTTACCATTCAGGCGAAAGGCCTCATATTTGTTCCTTCTGTGGCAAAAGTTTTATTACTGGAAGTGACTTGTATCATCATGAAAAAATTCATGCCAATAAACGCTCCTACAAATGTGAAAAGTGTTCAAAAGCTTTTAATACTTCATCAGACTTACATAAGCATAAGTTGTGTGTTCATTTAGACAGGAGCCAATGGAAATATGTGTGTACTTTTTGTGAACGACGTTTTCCACTAAAAACTAATTTAGATTCACATACTAAAACCCATACTGGTGAACGAAATTTTGCATGCCACTTATGTGATAGAAAATGCATTAACAGATCGGTTTTAATGCGGCATGTCAAATCTCATTCTAATGTGCGCTTATTTAAATGCAACTTATGCCAATTAGAATATAAATATGAAAAGTCTTTAGATATTCATATGacaaaaacacatggaataggtgaTGCTAAGATACCAGaacgtattaaaaaatatttatgtagcATTTGTCCTAAGTCATATTTTGCCAATAATAAATTGCAGAAACATATacgaacacataccggtgaaagaCCTTTTTCATGCCATATATGTGATAAGCGTTTTATAGATAAATCCTATGTTAAACAGCATCTGAAGTCTGCTCATAAAGTCTTGTGTGATAAAACCTATACTTGA
- Protein Sequence
- MESVVKCIVCFSNESFLINACNTDAMDIKWSSKLRLCVPEVDWLDDYLICNKCIHQLETAYEFRELCLKSFEIRKYLNNLDRCKANDNLLNTALPVMYHCKKCLGIPFKNSYELALHNVDVHFIVDCPYICMCCDENFKSNLELMRHEITHFNLSYCKNGYNSYNVDVLELDCQRIVDSAGLRYSKVNYLEHALEEKNKKDSAYNCYTCGKLFNTKMLLVTHLNFCKLLRTNQVDTDIPKLSGNLDINNRYDKAHRCKECLSLFSTANEIEKHYDKCVGIYNQQLKVNADGFQDDIEDNENITNIQDVPTISVPIEKRLISFRPKKRGRKKLEKVDQASNLCPTCGMVFNSRYLLKRHICNVHATEKNFQCDLCEQKFTSPVYLNAHKRYHSGERPHICSFCGKSFITGSDLYHHEKIHANKRSYKCEKCSKAFNTSSDLHKHKLCVHLDRSQWKYVCTFCERRFPLKTNLDSHTKTHTGERNFACHLCDRKCINRSVLMRHVKSHSNVRLFKCNLCQLEYKYEKSLDIHMTKTHGIGDAKIPERIKKYLCSICPKSYFANNKLQKHIRTHTGERPFSCHICDKRFIDKSYVKQHLKSAHKVLCDKTYT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -