Basic Information

Insect: Platerodrilus igneus
Gene Symbol: wdn
Assembly: GCA_036346225.1
Location: JARFIW010001492.1:833826-853917[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.069 38 8.3 0.4 2 20 179 197 178 199 0.93

2 10 6.5 3.6e+03 2.1 5.8 1 19 207 225 207 229 0.90

3 10 0.00012 0.063 17.1 0.6 1 23 235 258 235 258 0.94

4 10 7.3e-08 3.9e-05 27.1 0.3 1 23 264 286 264 286 0.98

5 10 0.00015 0.081 16.7 0.2 1 23 294 316 294 316 0.98

6 10 1.1e-06 0.00059 23.5 1.0 1 23 322 344 322 344 0.97

7 10 1.2e-05 0.0066 20.1 1.6 1 23 350 372 350 372 0.95

8 10 0.002 1.1 13.2 3.5 1 23 378 400 378 400 0.97

9 10 0.0021 1.1 13.1 2.1 1 23 406 428 406 428 0.98

10 10 2.3e-05 0.013 19.3 2.9 1 23 434 457 434 457 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.069	38	8.3	0.4	2	20	179	197	178	199	0.93
2	10	6.5	3.6e+03	2.1	5.8	1	19	207	225	207	229	0.90
3	10	0.00012	0.063	17.1	0.6	1	23	235	258	235	258	0.94
4	10	7.3e-08	3.9e-05	27.1	0.3	1	23	264	286	264	286	0.98
5	10	0.00015	0.081	16.7	0.2	1	23	294	316	294	316	0.98
6	10	1.1e-06	0.00059	23.5	1.0	1	23	322	344	322	344	0.97
7	10	1.2e-05	0.0066	20.1	1.6	1	23	350	372	350	372	0.95
8	10	0.002	1.1	13.2	3.5	1	23	378	400	378	400	0.97
9	10	0.0021	1.1	13.1	2.1	1	23	406	428	406	428	0.98
10	10	2.3e-05	0.013	19.3	2.9	1	23	434	457	434	457	0.98

Sequence Information

Coding Sequence: ATGATGCATCTCGAATTTCCAGATATATCATTTACAGTTAAGGAAGAAGAACTTCAATCTATAGAACAAATTAAAGAGGAATTACCAGGGTTTAAATTAAGTGGATTTGAAAGTTTGAGAAAACATAGTTTGTACAGTAACAGCAATAATAATGTGGAGTTTGAGTTACCAATCAACCCTACCATAATATCAAATGATGAATCACATATTAAAAATACGTTTACTCCACGAAAGAATAGACGTAAAGCTTTGCAACCTCAACGTGCTGTGCATGCGGAAGGATCATTAGGATTGGGTTCAGACTATTTTTCAGAAGACTTAGATAAAAAGTTTCTAACATGCTTTGAATTAATAGAGGAACCTTGTTCGTTCGTGCCTGATGCAGAAAATGACATTTACATACCTGATGATATTTTGGCAGACATTGATGTAGAAACTATTTGTACGGGTGCACAGGAAAAAAGtaATGGTGAGAACCTGGATAACGAACTATTAGACAATGTTAAAAAGGAATGGCGAGCTCATTGGGGAATAAAGTGTAACATGTGTGAACAAATATTTGCTTATCGTCATGAATTTGATCAACATTACCTTAATAATTATGGTCTTCCGGCTGTTTATATGTGTTCATTCTGCAATAAGACTGCTGAAAAGTATTCTACATTTCGATCTCATTGTTATCGTCATATAACTGAAGGCCGATATAGGTGCAAGGAATGTCCCAGATCATTTAGTTTATATAATATGCTACAAGTACACATTACTGCTAAGCACACCAAAGCGAAACCTTTTAGTTGTGAGGATTGTGGTAAATCTTTTGTGACCAAACCTGGTCTTAAGATTCATATTAGGAAACACAAAGTGGAGGCTAGAGAGGACTATCCATGTGTCGAATGTGGGAAAATTTTACATACACGTGGTGGCTTAACTTCTCATATGAATGTACATAGATTAGGAAGACGATTCATGTGTGATGTATGTGGTAAAACATTTACACAGAAAGTGAATATGCAGCAGCATGTGAAGCAACATACAGGTGATAAACCTTATATTTGTGATCAGTGTGGAAAAATGTTTGCAGAACGATCTCATCTTGCACGCCATTACAGTTTTCATAGTAATGTAAGACCATTCCAATGTGACACATGCCAAAAAATGTATAAGACTGAACGTTGTTTAAAGGTGCACAGTTTAGTTCATGCTGCCGCCAGACCTTTTGTCTGTAACTTCTGTAATAAAGGCTTCTTGAGTAGTACAAAACTGAAGCAACATCGCAATATTCATACAGGAGAACGGCCATACAGGTGTAATTATTGTGAGCGAACATTTACAAATTACCCTAACTGGTTAAAACACACACGTCGAAGACATAAAGTGGATCACAAAACAGGTGAATGTTTACCTCAGAATATTAGGGCAAGCGATGTTACAAATGATGATAGTGTGGCAAAAGTAGAGGAATCAATTGTAACGCCTACTAATGTTGTTCCTCCACAGCCTTCCGAAGCATCTGATGCTGAATTGGTTGAATTTATAACTTCACCAAAAGCAGAAGAACTTTTGTTTCAACACGGAATAATTAGTCTTCCAAATAATGTTGATGAGCGTGTTATTATTCCTCAACATTTTGATTTTATTGCCAATGCAGGTTCTTCTCTTGGCCCATATGTCCAAATGCAAATACCAGTTACATCTGATTTAATACATTCTTATAACATGCCGTTTAATGACCTAGCATATTCCTCTTTTGTACCATATACATTACAGTGTGAATGA
Protein Sequence: MMHLEFPDISFTVKEEELQSIEQIKEELPGFKLSGFESLRKHSLYSNSNNNVEFELPINPTIISNDESHIKNTFTPRKNRRKALQPQRAVHAEGSLGLGSDYFSEDLDKKFLTCFELIEEPCSFVPDAENDIYIPDDILADIDVETICTGAQEKSNGENLDNELLDNVKKEWRAHWGIKCNMCEQIFAYRHEFDQHYLNNYGLPAVYMCSFCNKTAEKYSTFRSHCYRHITEGRYRCKECPRSFSLYNMLQVHITAKHTKAKPFSCEDCGKSFVTKPGLKIHIRKHKVEAREDYPCVECGKILHTRGGLTSHMNVHRLGRRFMCDVCGKTFTQKVNMQQHVKQHTGDKPYICDQCGKMFAERSHLARHYSFHSNVRPFQCDTCQKMYKTERCLKVHSLVHAAARPFVCNFCNKGFLSSTKLKQHRNIHTGERPYRCNYCERTFTNYPNWLKHTRRRHKVDHKTGECLPQNIRASDVTNDDSVAKVEESIVTPTNVVPPQPSEASDAELVEFITSPKAEELLFQHGIISLPNNVDERVIIPQHFDFIANAGSSLGPYVQMQIPVTSDLIHSYNMPFNDLAYSSFVPYTLQCE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -