Pign031953.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Platerodrilus igneus
Gene Symbol
-
Assembly
GCA_036346225.1
Location
JARFIW010000386.1:5443762-5498882[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.8 4.3e+02 5.0 0.0 2 23 7 28 6 28 0.95
2 15 0.091 49 8.0 2.5 1 23 421 444 421 444 0.91
3 15 0.037 20 9.2 0.1 1 23 536 559 536 559 0.95
4 15 0.016 8.7 10.3 0.6 3 23 567 587 565 587 0.98
5 15 0.00013 0.068 17.0 2.4 2 23 590 611 589 611 0.97
6 15 7.1e-05 0.038 17.7 1.2 1 23 617 639 617 639 0.98
7 15 0.00012 0.064 17.1 4.7 2 23 646 667 645 668 0.95
8 15 0.81 4.4e+02 5.0 2.0 5 23 681 699 680 699 0.96
9 15 0.00011 0.061 17.1 0.9 3 23 706 727 705 727 0.97
10 15 0.0071 3.8 11.5 0.1 2 23 743 763 742 763 0.97
11 15 0.00011 0.059 17.2 1.7 1 20 769 788 769 791 0.93
12 15 2.4e-05 0.013 19.2 0.8 1 23 799 821 799 821 0.99
13 15 0.0017 0.95 13.4 3.3 1 23 827 849 827 849 0.98
14 15 1.7e-06 0.00092 22.8 3.5 1 23 855 877 855 877 0.99
15 15 0.0015 0.83 13.5 5.5 1 23 883 905 883 906 0.95

Sequence Information

Coding Sequence
ATGGATACAGAAAATGATGTTTGTCCTGTTTGCACCTTATTTTTAAGACCTGGTATTACATTAAAAGCTCATTTAAATAGCCATCCTAAACAAAAAGTGATTGATGCACTTATTAATCTTACCTCTCTAAAGAGCAATAAACATTCTATAACATCAGAAACTACATGCGATCGTCAAATTGCTAAGCGTACTTCGAAACAACATGTCACAAAGTTATCAAGTGAATCTATATCTACGGCCAACCATTCATTCATTTATCAACAGTTTATGAGCACCGCTCAACCACCCTTAGGACAGCAATGTATAACGATACCAACAACTTTTAATTCGTCAATGATGTACCCACCTTATGTATATCAACAACAGCTTATCATGCCTGCACCACCACCACCATTGAATATAATCAATTCTAAAATGCCAGTTGTAGACTTTTCTTTAAGAGAGAGTATTTCTGAAGATCATCTGAACGAAGTTGTTCACTTAAATAATGTCAGTGTTGATGTTTCAAATAGAAAGGACCTAGATGAAGAAATTATGTCTAATTGTAGCAGTGCTGAAGTAGCATCGTCTTTACAGTTTGAAAATAATATGGATGATGTGAATAGCAAGGACCTGAATGTAATTTCTCCTGGTTCTGGTTATCTGAAAATACATCAAAATATTGATAAAGCTTGTCAGACTTATGAGGAGCATGAAGATACCGATGATGAGAAAGATGGAGTGGCTCCTGAAACGTTTTGTACTGATGAAATGAATATCGAACAACCAAGTGAACAGGTTCTTAATTTAAATGGGGTGCAGTTGATGCTTTTTGATAATTTTATGACTGGTCAAATAGTTTCTAAAGTTAACGATTTTGAATGCAATAATGAGGAAGCAGTTTTAATGAATATTGGCAGTAATGATTATGATAAATATGAGACTAATGATAATTTATCAACAGAGAATTTTCAGGATGATGGTTTCTCACGACATAGTGGTACTAATATAAGTATACGAGCACATGAAAACATGCCACCAAGAGGGGAACTATCTGGACAGGAGAGCAATGGAACAACAAGCGATATGTCATGGGGTCGTGTTCGTTGTGAGAGTAACTCAGCTGCCTCATATGACTTGTTTGCTCGTGAAACTTGGGAAGGTTCTGATGGTTCTGATCATGAAGCTGTACGACATCCATTTCAAAATCGTGTTCCAGTCTACAATGAATCAATAGATGACACCCCTACTATTATTAGTGTTACTGAACCTCCTTTAAACTTCAAGTGTCCAACTTGTGGGCAGGGTTTTAAATGTCCAAAGGAACGAAAAGCTCATCAAACAGAGAAACATAGTAAAACATctttagataaatattcaaaatctgGACTTAATTTAATTggtgcaaatattttaaatacagctGCAGTGAAAAAATTAGTTATTAAACCAAAGAGAACTATTGAAATTAAAAACGAAAACAATTTTgatgaactttttaaaaacaagGTTTGTGAAAACATAAGCAatatagataataaattttctagtgATCCCCTAGTATTTGAAGCTGTAAAAGGGGAAAATAAGTGCAATATGATTGAAGATGACAAGAATATAAGTTGTTTTGAATGTTCAATTTGTGTTGCTGCATATCCAGATATGAAGTTGTTGAAAAAGCATAAACAACTTGTTCATGGATTTTCTAATGGTTTTGGTTGTGAAACGTGTGGAGAAGTAATGAAAGATAGAAAAACTTACACAGAACATTTAAGAAAACATCCTCTAGAATGTAGATTGtgtggaaaatatttttatagacgTCAAAATATGAAACTACACATGAAACGTCACCTAGGAATAAAACCTTTTGTATGTGAATATTGTGAAAAGCCATTTTTTTCTAAACAGAAGTTACAAGAACATAGAAATGTTCACACTGGAGAGGCTCCAATTAAATGTAACCTGTGTGGCGACACATTTCGACGGCATTCGAATTTAATACAACATCGTAATACACATCATATTAAATCAGGAAAAAAGGTAAAGGATTATATTTGTCATTGTGGCGAGGTTTTGCATACCAAGAAAAAATTGGCATGGCATCAGGAAATTCACGATGCAAAACCGAAAGCGTGTCCAAAATGTAATGAAAAATTTATACACATGGCTAGTTTAACACGACATGTTCGAAGAGCACATAATAGTAGATTTGTACCTGACGAAAAGAGAAGTACTGAAAATGTTGAATGTCCTatatgtaataatgtttatttaaaatcgTCCCTTGAAACACATATACGACAACATAGTGACCTAAAAAAACATTCGTGTACAATTTGCAATAAAGAGTTTTCCACCAAGTGGAACTTAAAACTTCATAAATGGATACATGCTTCTAGAACATCCAAACCATTTAAATGTGATCAATGTAAGGCAGCGTTTATAAGAGAATCCGATTTTACATCACATATGAATTCCCACAAATGTCTTCGGCCATATACatgtaattattgtggtgcaCAATTTATAAGGAAGAACAATTGCCAAAGACATGTGAAGGAACACGAACGTGATAAAACTTTTACATGCCAAGTCTGTGGAAAAGCTTTTCATAGATCATACTATCTGAAAGATCATTTGCGAACACATAATGGGTTTCGTCCTTTTATATGCCATATTTGTGGGAAGACCTCGGCAACTAAATCAAATCATAATAAGCATTTAATGATACATCATGCAAAGGAACCCGTTAatactgaaaattaa
Protein Sequence
MDTENDVCPVCTLFLRPGITLKAHLNSHPKQKVIDALINLTSLKSNKHSITSETTCDRQIAKRTSKQHVTKLSSESISTANHSFIYQQFMSTAQPPLGQQCITIPTTFNSSMMYPPYVYQQQLIMPAPPPPLNIINSKMPVVDFSLRESISEDHLNEVVHLNNVSVDVSNRKDLDEEIMSNCSSAEVASSLQFENNMDDVNSKDLNVISPGSGYLKIHQNIDKACQTYEEHEDTDDEKDGVAPETFCTDEMNIEQPSEQVLNLNGVQLMLFDNFMTGQIVSKVNDFECNNEEAVLMNIGSNDYDKYETNDNLSTENFQDDGFSRHSGTNISIRAHENMPPRGELSGQESNGTTSDMSWGRVRCESNSAASYDLFARETWEGSDGSDHEAVRHPFQNRVPVYNESIDDTPTIISVTEPPLNFKCPTCGQGFKCPKERKAHQTEKHSKTSLDKYSKSGLNLIGANILNTAAVKKLVIKPKRTIEIKNENNFDELFKNKVCENISNIDNKFSSDPLVFEAVKGENKCNMIEDDKNISCFECSICVAAYPDMKLLKKHKQLVHGFSNGFGCETCGEVMKDRKTYTEHLRKHPLECRLCGKYFYRRQNMKLHMKRHLGIKPFVCEYCEKPFFSKQKLQEHRNVHTGEAPIKCNLCGDTFRRHSNLIQHRNTHHIKSGKKVKDYICHCGEVLHTKKKLAWHQEIHDAKPKACPKCNEKFIHMASLTRHVRRAHNSRFVPDEKRSTENVECPICNNVYLKSSLETHIRQHSDLKKHSCTICNKEFSTKWNLKLHKWIHASRTSKPFKCDQCKAAFIRESDFTSHMNSHKCLRPYTCNYCGAQFIRKNNCQRHVKEHERDKTFTCQVCGKAFHRSYYLKDHLRTHNGFRPFICHICGKTSATKSNHNKHLMIHHAKEPVNTEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-