Pign169450.2
Basic Information
- Insect
- Platerodrilus igneus
- Gene Symbol
- salm
- Assembly
- GCA_036346225.1
- Location
- JARFIW010001617.1:1917951-1937927[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3.2 1.7e+03 3.1 0.0 2 20 54 72 53 74 0.90 2 10 6.9e-06 0.0037 20.9 0.9 1 23 379 401 379 401 0.98 3 10 9.4e-06 0.0051 20.5 1.9 1 23 407 429 407 429 0.98 4 10 0.086 47 8.0 3.8 2 23 734 755 733 755 0.98 5 10 8.4e-08 4.5e-05 27.0 0.6 1 23 761 783 761 783 0.97 6 10 9.6e-05 0.052 17.3 3.5 1 23 793 815 793 815 0.98 7 10 0.0035 1.9 12.4 2.1 2 23 1080 1101 1079 1101 0.97 8 10 4.6e-07 0.00025 24.6 1.3 1 23 1107 1129 1107 1129 0.99 9 10 1.9e-06 0.001 22.7 4.0 3 23 1210 1230 1208 1230 0.96 10 10 2.7e-07 0.00015 25.3 0.9 1 23 1236 1258 1236 1258 0.98
Sequence Information
- Coding Sequence
- ATGAGAATGGATATTAGAAATAACAAATGCGATAGCCCCTCTCCAACACGTTCAAGAAAAAAAAATGTACTACGTCCCTATGGAGGAATATCTCTTAATATTAAAGAAGAATCAGATGTTCCAACTACAAACGAGGAATTTCCAGAAATGGAGATCGTTATGTGCTCTAGATGCCAAGAACAATTTACAGACATCCAAGAGTATATCGAACATAAAGCTGTCTGTGGAGCCAAAACAGATGTCCCGTTTGATTCAGATGAAATGGTCGTATCTGAGAttgaagacgaagacgaagatgACGAACCTGGAGAGAAGCGATTGGAGGAAGTTCGAAGACATTGTCAAGATGCCGCTAACAACAATAGTCTGGAAGGGAGTTCACCGGAAGAAAACGAGAACTCCAGATTAGGTTTTCAATTTCCTGCATCTGCAGGGCATGTGACACTTGAAGCTTTGCAAAATACCAAAGTTGCAGTGGCGCAATTTGCTGCTACTGCAATGGCTAATAATGCCGGGAATGAGGCGGCAATGCAAGATTTAGCGGTGTTACAATCTACACTTTTTACTCTTCAACACCAACAGGTTTTTCAGTTGCAGCTAATTAATCAGTTGCAACAGCAGTTGTCTTTGAATAGAGGTAAAATTGGTACATCTACGTCGCCTCCTCTTGATGAGGAAGAGTTACCAAAATCGCCTTTAAGATGttcgccaccgccaccgccaccttCAACACTTCCACCAGCGCTTATTAAGTACGAATCTGAACCTACACCGCCTCCAAAAGTTGTAACACCTGCTCCGCCTCCTTTACCAATGGCTCAATCGTTTGAACCTTCTAATAATTTAGAATCGTCCGTTGCAATGAGTATATCGTCTTCCATTCCTTTACCTTTACAACCTCCCATGTGTTCTATATCATCTTCATTAGCGTCCAGTATAATAACACATAATAATGAACCACCTCCTTCGCTAGATGAACCTAATACACTTGAAATGTTACAAAAACGAGCACAAGAAGTATTGGACAATGCCAGCCAAGGATTATTAGCAAATAATTTAGCAGATGAATTAGCTTTTAGGAGGAAAGATTCTCTTTCTTCATACGATAAAGGACGAAACGAACCCTTTTTTAAACATCGTTGTAGATACTGCGGCAAAGTATTTGGATCAGATTCTGCACTTCAAATACATATCCGTTCTCATACTGGTGAACGACCGTATAAATGTAACGTATGTGGTAGCAGATTTACTACGAAAGGCAACCTAAAAGTTCATTTTCAGAGACACTCTTCTAAATTTCCACATATCAAAATGAATCCTAACCCTATACCAGAACACTTGGATAAATATCATCCTCCACTGCTAGCACAATTGGGGCAACAATCTGCTTTATCGCCTGGACCACCTCACCATCCGCCACATGGATTTGTTGCAGGTTCCCCTTTTCCATCTGCCTCCATACCTATATATCGACCGACAATACCTCCTCCCGACTTATTAAATAGTAGGCTACAACCATCTTCCCTTAGACTACCAGAAAGTCCGATTCGACTTTTTCCACCACATCCTCTTTTTATGAAACGGGAGGAGCAAGATGTTCCTGAAAATTTAAGCAAGCCAAATAGTAGATCTCCAGAACCTAGTGATAATTTAACCTCAAAAACTGATAGTTATAGCGAAAAAAGAGATGATGGGGAAAAGAAACTGCCGCTTACTGTTCCACAGCTAACATCAAAACTAGAAGTTAATGAAACAGAGCATGAATCCGAAAGGTTTCATACTCCTTCACTTTATGATGATTGTAGTACTGATAGTAAATGTAGTAATGAAGACATTTTAGAGCGTAATAGTTCTTTAAATGGGAGTTCGGGGAACATACAGGAAGAACCTGAAAATTTATCAAATAGAAGCAACTCGATATCAATTCCTTTAAATGTATCATCAGCTCAAAGGCTTCCTCCGAGCTTTCCTTTCGTACAAACATCCTCACCTCCTAGTAGTACATCGTCTGGTAGTTTAGGGTCTTTTCCACATACGTTTGACCCAGCTAGAGATCCTGCAATTTATACAAACTTACTACCGAGACCTGGAAGCAACGATAATTCGTGGGAAAGTCTGATAGAAATTACTAAAACCTCGGAGACAACTAAACTCCAACAGCTGGTagataatattgaaaataagttAACAGATCCCAATCAGTGTGTTATATGTCATAGAGTATTATCGTGTAAAAGTGCGTTACAGATGCATTACCGAACACATACAGGAGAAAGACCTTTTAGGTGTAAAATATGCGGAAGGGCGTTTACGAccaaaggtaatttaaaaacccATATGGGAGTACATAGAGCGAAACCACCTATGCGTGTTCTTCATCAATGCCCAGTATGCCACAAAAAGTTTACAAATTCATTGGTGCTACAACAACATATCCGTTTACACACTGGAGAACCGACTGATCTCACACCCGAACAAATTGCTGCTGCTGAAATTAAAGACTTACCTTCACCCTGTTCCTTTTCCGGACTTCCAAATTCCATGAATCCATTCCTGAACCATAGTATTCCTATACCCGGATTATCCCCATTGGGACCAGGTAGCTTTCCTTTTAATATGAGGCTGGGTGAAATGGATGTTAAATCCGAGCAAGATTTTATGGAAGAAGACGAAGATTgtgacgatgatgatgacgacGACTTCAGTACGTTAGAAGGTAATCATTTTTCTGAATCACCTGTAGCATCTGAACAACAAGTTCATTCAACTAACACGCCTCAGTATTCAACATCATCTGGAATTAGTTACTCTGCAGAAGATCTATGTTCTAGGATAGTCGCAACGACACCTCCAATGCAAAATGGCAATAAATCACCAACACCATCGGGAGGAACAAGTCCAGCTGATTCTGAAATTCGTACGTCGCCACATCTGAGTTCTACGCCCGTTCAGATTCCACGGCCGCCTTCGCTTCAACAACAACCTATCAGCCCTTCGCCTTCTGAAACAAATTCGTTAGGTGCTCTTGATCTCACCCGTTCAACGCAACCACTCGTATCAAATTGTGCGCCGAGCTTTCCACCATCTTCAATATTTTCGAACTTCCCCATTCTTCCGCCTTCTCAAATAGGAACGCCACTTATGCCATCAGCTTTATCTTCACTAACAACGACGGTGCTTACGTCAACTCCGTTCAACCCCTTGGGATTGATGTCACCAGCAGGTCGTGGAAATACCACGTGCAACATCTGTTTCAAAACCTTTGCCTGCAATTCAGCTCTCGAAATTCATTACCGAAGTCATACGAAGGAGCGACCGTTCAAGTGCAACGTGTGCGATCGTGGATTCTCAACCAAGGGTAATATGAAACAACATATGCTAACCCATAAAATTCGTGATATGCCACAGCACATGTTTGATAACCCCATAATGAAGTCTGAAGAGCCTCCATCTCCACTGCCATTACCTCCTACAACGCAGCTACCGCCAGAACCCCAAGAAACTGAACTGAAACCAAGCCTTCCACCTCTAGAATTCTCCTGTGATCAACTACCCAAGCGAGCTCCAACGGAAATTGATATGCCTTTACCAAAACGTCCACCTAgCTTGCAGGGCAGTAAGCACTTGTGCCACGTGTGTAATAAGAACTTCTCATCAAGCTCGGCCTTGCAGATACACATGCGAACACATACGGGTGATAAACCATTCCGATGCACCGTGTGTCAGAAGGCCTTCACTACAAAGGGTAACTTAAAGGTGCACATGGGTACCCATATGTGGAACAATGGTGCTTCCCGCCGAGGACGTCGCATGTCATTAGACCTACCGCCCATTCCGATGACTCCGAAGGATTCAGAATTTCTGCAACGAAGGCCAGATCTTTTTTATCCATATCTTCCAGCCCCATTCCTTAACGGCATGCAACAAAAGGTAGATGATAAACTTCTGAATATTCGTTCCAGCATAAGGTCAGATCCATCTTCGTCCACTTTAAATTATGCATCCTCCGTAGCTAAAAATACTGTGATAGTCAAACCTAAGGATATTTCTCTAAGTAATGCTGCAACTAAATCTTTACTATTGCAGAAAATAAATCCAGCTACTAATGAAATTAGTATACACAAAGTAAAAACCATCAAGAATGGTGGACTTGCTATTGAGTGCCCTAGCACATCTGTTGCTGAAAGCCTTATTGCCAATAATGTGTCTGATGTGCTTACTGTCAGGGATACTGTTAAATTTAATCCTCGCTTACGAATATCTTCTCTCACTGAGAAACATACGCCTGATGATCTGAAACATTATATAGTTTCACAAAATACTGATATACTGAACCAAACAGCAAATATACAAGTATTAGATGTTGCCCTTTGCAGGAAAAACAAGAACGCTCACCAGTGTTTGTTACAGACTGACCTGGATTCTTATAATAACATTATCAACAATGGCTTCATCCGTGTTGGATATGATCATTGTCGTTTTTGA
- Protein Sequence
- MRMDIRNNKCDSPSPTRSRKKNVLRPYGGISLNIKEESDVPTTNEEFPEMEIVMCSRCQEQFTDIQEYIEHKAVCGAKTDVPFDSDEMVVSEIEDEDEDDEPGEKRLEEVRRHCQDAANNNSLEGSSPEENENSRLGFQFPASAGHVTLEALQNTKVAVAQFAATAMANNAGNEAAMQDLAVLQSTLFTLQHQQVFQLQLINQLQQQLSLNRGKIGTSTSPPLDEEELPKSPLRCSPPPPPPSTLPPALIKYESEPTPPPKVVTPAPPPLPMAQSFEPSNNLESSVAMSISSSIPLPLQPPMCSISSSLASSIITHNNEPPPSLDEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRRKDSLSSYDKGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPYKCNVCGSRFTTKGNLKVHFQRHSSKFPHIKMNPNPIPEHLDKYHPPLLAQLGQQSALSPGPPHHPPHGFVAGSPFPSASIPIYRPTIPPPDLLNSRLQPSSLRLPESPIRLFPPHPLFMKREEQDVPENLSKPNSRSPEPSDNLTSKTDSYSEKRDDGEKKLPLTVPQLTSKLEVNETEHESERFHTPSLYDDCSTDSKCSNEDILERNSSLNGSSGNIQEEPENLSNRSNSISIPLNVSSAQRLPPSFPFVQTSSPPSSTSSGSLGSFPHTFDPARDPAIYTNLLPRPGSNDNSWESLIEITKTSETTKLQQLVDNIENKLTDPNQCVICHRVLSCKSALQMHYRTHTGERPFRCKICGRAFTTKGNLKTHMGVHRAKPPMRVLHQCPVCHKKFTNSLVLQQHIRLHTGEPTDLTPEQIAAAEIKDLPSPCSFSGLPNSMNPFLNHSIPIPGLSPLGPGSFPFNMRLGEMDVKSEQDFMEEDEDCDDDDDDDFSTLEGNHFSESPVASEQQVHSTNTPQYSTSSGISYSAEDLCSRIVATTPPMQNGNKSPTPSGGTSPADSEIRTSPHLSSTPVQIPRPPSLQQQPISPSPSETNSLGALDLTRSTQPLVSNCAPSFPPSSIFSNFPILPPSQIGTPLMPSALSSLTTTVLTSTPFNPLGLMSPAGRGNTTCNICFKTFACNSALEIHYRSHTKERPFKCNVCDRGFSTKGNMKQHMLTHKIRDMPQHMFDNPIMKSEEPPSPLPLPPTTQLPPEPQETELKPSLPPLEFSCDQLPKRAPTEIDMPLPKRPPSLQGSKHLCHVCNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMWNNGASRRGRRMSLDLPPIPMTPKDSEFLQRRPDLFYPYLPAPFLNGMQQKVDDKLLNIRSSIRSDPSSSTLNYASSVAKNTVIVKPKDISLSNAATKSLLLQKINPATNEISIHKVKTIKNGGLAIECPSTSVAESLIANNVSDVLTVRDTVKFNPRLRISSLTEKHTPDDLKHYIVSQNTDILNQTANIQVLDVALCRKNKNAHQCLLQTDLDSYNNIINNGFIRVGYDHCRF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -