Pign106737.1
Basic Information
- Insect
- Platerodrilus igneus
- Gene Symbol
- -
- Assembly
- GCA_036346225.1
- Location
- JARFIW010001119.1:1283631-1286261[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 7.9 4.3e+03 1.9 2.8 1 21 2 22 2 23 0.94 2 18 0.056 31 8.6 0.0 6 21 89 104 86 105 0.92 3 18 0.00082 0.44 14.4 1.9 2 23 215 237 214 237 0.92 4 18 0.028 15 9.6 0.2 2 23 245 267 244 267 0.92 5 18 0.00017 0.093 16.5 0.1 1 20 284 303 284 305 0.95 6 18 3.5e-05 0.019 18.7 0.6 2 23 310 331 309 331 0.97 7 18 0.00028 0.15 15.9 0.8 2 23 355 376 354 376 0.94 8 18 0.086 47 8.0 1.1 2 23 435 456 434 456 0.96 9 18 9.7e-07 0.00053 23.6 4.8 1 23 487 509 487 509 0.99 10 18 0.26 1.4e+02 6.5 0.7 3 23 531 551 529 551 0.96 11 18 4.2e-05 0.023 18.5 1.2 1 23 576 598 576 598 0.97 12 18 0.0057 3.1 11.8 0.1 2 23 611 633 610 633 0.94 13 18 0.0001 0.055 17.2 0.1 1 23 650 672 650 672 0.94 14 18 0.0061 3.3 11.6 0.1 1 23 703 726 703 726 0.95 15 18 0.98 5.3e+02 4.7 2.0 2 23 736 757 735 757 0.94 16 18 0.0002 0.11 16.4 1.7 1 23 770 792 770 793 0.95 17 18 0.00013 0.073 16.9 1.2 1 23 803 825 803 825 0.98 18 18 0.00034 0.19 15.6 0.2 1 23 851 874 851 874 0.97
Sequence Information
- Coding Sequence
- ATGTTTACTTGTTACAATTGTTTAATCACTTACTACGATAGACCTTCTTATATGAGCCATTATTGTAAATGTGTTAAAGCACTTCTACTTAACACTAGACGGCTTTCTGAATTTTCTAAGAATTCTGaagtaaaaattcgtatttaccAAAATTTTAAGTGCCTTAAATGTAGACTTATTTATGCTCTTTATGAAGATTTTTGTGGTCATTTAGATGATAATCATATGGAAATTGAACAAGATTCATCTCCATATACATGTTTATGTTCAGAATCGTTTGACGATGCAGAAGAACTCAATCAACACATGAATGTGTCGTGCTTTATTATATACTATTGTGATGCATGTTATACATGTTATTCCACTATTGACGAATTTAGAGAGCATTGTGAGAAAGAACACGATAATATGGATGGTGATAGTTTGAACAAATATGACTACTATCGTAAGTCGAACATTCGTGCTGGTGAATCTATTTCTGCAGTAAAGGAAGGTGAGCGTCGTATATCTACCAGACGACAAACACTTAATGAAAGAAAAAGCTCCATATTAGAAGCTGAAGATGAGAAAAAGTACACACCAAAATCTAAGAAAGTAGTTAACTCACAttctttgaaaaatttgaaaatatcaaaaccaACTTCATGTCCTGAGTGCAATAAAATGTATTCATCGTATCATAATATGTTGCGTCATTATACACTGATGCATGATGAAACTGGTTTAATACTAACTTGCCAGTTTTGCCCGGAGAAGTTTAGACTTATTAGTGAACTTAAAGAGCATGAAGGTACAGTTCATGAAGAGATTGTTTCGCCAAATgagaaaacaacaaacaacataccTAAATTTTCATGCCCCGACTGTAAGGAAATGTTTAATACTGCAGAAGAATGGAAGAAGCATATTGAATTGTACCCTAAGAAAACATGTGAAGAATGTGGCAAACAATTTAATTTACAATCTGATCTAGAGCAACATAGAagtgtacatttaaatataaaagtttataGAGATTCAAAAACCCAGAACTATAAAAGTACCATGCTGAGTCCTGCGTTAAGTTGTACTGTCTGCGACGTAACTTTCTCTACTAAGAAGGAATTGCTTCAACATAAATCCCTACATGACAAAATGCCAGAATTAACAATTCAGGATGAAAGTTTACTTGATGAAAAAAAGGAGGATAGTAAAAAATACAGTTGTTCGCcttgcaataaaaattatttaagttaTGCAGGGATATATGATCATCTTAAAAAGCATCATCCTGATCAGGAGACTATTAAGGAATTTCCAAAACAATGTCCACACTGTGATAAGGTGTTATTAACACGAGGCGCTTATGGAAATCATAAACGAATGCACGATCGATTATTGGGTTTACTTCCAAAAACTGAAGAAGAAACGCCCAAACAAAAGGTTCCAAAAGTTCTCTCTGATGATTCAGAATCATACTATACGTGCAAACGATGTTTCAAAGTTTTTTCTAGtaagtacaatttaaaaaatcacATGAAGTCTCATGgaataaatttgaataatagtCGAAGCAGTGTAAAAACTGGTAAAGTTCTTAAAACGTATTGGTGTGATATTTGTCACCAAGCTTGTATTGGTTATGCTGAACTACAGGAACATAAACAAGAACACCGCCAAGAAAAGTTGAAAGTAACTAATATTGTAAGTGAGCCAGATTTACCACAACAGATTAATCCATTTATATTTAATTGCGATATCTGCAGCGCCtcattttcaacaaattttgctTTAAAGAGACATAGAGAAAAGCACGATCAAGATGTGAATAAGCAAAACAATGCAGTCGTTTACTGTAAGTATTGTAAAATACCATTTGCTAGTACTGCACAGTGGAATGAGCATATGTCAAATGAACATGCCGAGATTTCATGTGAAAATAAAGAATCGCAGCTTGTGAGTAAAACATATGCATGCAAAATATGTAAGAAAGCTTTTGATAATTCAGGTGCTTTAGCTTCACATCAGGGTTGGCATAAAAGAGGAAAGGTTGCCAAAAAAGTGTtcaacaatacaaaaataaaaaccgAATTACCTGTACTAGTGCCTAAGGTTGAAGTAAATTCTTACCAGTGTACTAATTGTGCCTTACAATTTATTAACGAAACTGCCTTACAAATACATATTCTAGAAACACACAGAAACATTACACGAGTGCTTTCATTAAGTTGTAGCAGCTGTTGTACAAGTTTTGAATCAAAATCTGCATACGATACCCATATGGAGTTGCATAAAGTAGTGCAAAATCAACGAGCAACTGCAAAACCATTTATTTGTCAGTTTTGTCCTGCTCGGTTTAGTCGGAAAGATAGATTAAGAGGGCATATTAGAGTACACCATGGTGATCAAGTGGAACCTACTGAAACGTTTAATTGTACGCAGTGTAGTCGTACCTTTGACAAACAAACTGCTCTTATTACACATCTGAAGGTACATGAACGTCATCGTTTATCAGGTATGTCAACACAACTTTCCAAAGGTTCATCCATATCAGCatcaaacaaaaatgtttattctTGTTCAATATGCAATGTGGGTTTTTCCTTATCCAAAGATCTGAGAACTCATGTTATTACTGTTCAtccattttag
- Protein Sequence
- MFTCYNCLITYYDRPSYMSHYCKCVKALLLNTRRLSEFSKNSEVKIRIYQNFKCLKCRLIYALYEDFCGHLDDNHMEIEQDSSPYTCLCSESFDDAEELNQHMNVSCFIIYYCDACYTCYSTIDEFREHCEKEHDNMDGDSLNKYDYYRKSNIRAGESISAVKEGERRISTRRQTLNERKSSILEAEDEKKYTPKSKKVVNSHSLKNLKISKPTSCPECNKMYSSYHNMLRHYTLMHDETGLILTCQFCPEKFRLISELKEHEGTVHEEIVSPNEKTTNNIPKFSCPDCKEMFNTAEEWKKHIELYPKKTCEECGKQFNLQSDLEQHRSVHLNIKVYRDSKTQNYKSTMLSPALSCTVCDVTFSTKKELLQHKSLHDKMPELTIQDESLLDEKKEDSKKYSCSPCNKNYLSYAGIYDHLKKHHPDQETIKEFPKQCPHCDKVLLTRGAYGNHKRMHDRLLGLLPKTEEETPKQKVPKVLSDDSESYYTCKRCFKVFSSKYNLKNHMKSHGINLNNSRSSVKTGKVLKTYWCDICHQACIGYAELQEHKQEHRQEKLKVTNIVSEPDLPQQINPFIFNCDICSASFSTNFALKRHREKHDQDVNKQNNAVVYCKYCKIPFASTAQWNEHMSNEHAEISCENKESQLVSKTYACKICKKAFDNSGALASHQGWHKRGKVAKKVFNNTKIKTELPVLVPKVEVNSYQCTNCALQFINETALQIHILETHRNITRVLSLSCSSCCTSFESKSAYDTHMELHKVVQNQRATAKPFICQFCPARFSRKDRLRGHIRVHHGDQVEPTETFNCTQCSRTFDKQTALITHLKVHERHRLSGMSTQLSKGSSISASNKNVYSCSICNVGFSLSKDLRTHVITVHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -