Pign102052.1
Basic Information
- Insect
- Platerodrilus igneus
- Gene Symbol
- -
- Assembly
- GCA_036346225.1
- Location
- JARFIW010001103.1:1323686-1324891[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.9 1e+03 3.8 0.4 5 23 91 110 87 110 0.87 2 11 3.5e-07 0.00019 25.0 0.4 2 23 119 140 118 140 0.98 3 11 8.7e-07 0.00047 23.8 1.0 1 23 146 168 146 168 0.99 4 11 1.9e-07 0.0001 25.9 1.8 1 23 174 196 174 196 0.99 5 11 0.00089 0.49 14.3 4.3 1 22 203 224 203 224 0.96 6 11 6.3e-06 0.0034 21.1 2.5 1 23 231 253 231 253 0.99 7 11 2.2e-07 0.00012 25.6 1.3 1 23 259 281 259 281 0.99 8 11 3.8e-06 0.0021 21.7 4.6 1 23 287 309 287 309 0.98 9 11 1.1e-05 0.0062 20.2 2.8 1 23 315 337 315 337 0.99 10 11 1.1e-05 0.0062 20.2 2.6 2 23 344 365 343 365 0.98 11 11 0.00014 0.078 16.8 0.8 1 23 371 393 371 393 0.90
Sequence Information
- Coding Sequence
- ATGTCGAATGAAGAACTTCAAGAAATAGTTAAATCTCAAACAGATGTTCTTGAGCATGTACCTACTGTAAATCCTGAACCTGATCCATCACCTGGTTATGTACTCCCTCCTTTGTTAGACCTTTCAGTTGAAGATTTAATTCCAACTGACGAAATTAAATGCGAGAGAGATGAAATTGACTTCTTTGGAGGATCAGAATGGGATAGACTCCAGGCAAATACTATTCATACACTTAATTCGGTAGCTATCAATCGTCCTCATCTTTGTATATTTTGCGGTAACAgatttgcatataaaaatgttTTACGTATACACGTACTAGGTGTGCATACGTTAGACGATGATAAGCCTGTCAAATGTAAAATTTGTGAGAGAGGTTTTCCACAACAATCATATTTAACTATTCATATGCGTTCGCATACAGGAGAACGCCCGTATAAGTGTGAACTGTGTGATAAAACCTTCgcagttagaaatgttttaaaaagtcatATGCGAACGCACACAGGCGAACGACCATATAAGTGTTATCTATGTCCAAAGATGTATCGTCAAAGCTCTGATTTAAGTAAACACATTCGGACACATGTTCCAGATGGAAAACCATATCATTGTGAGAGGTGTAACAGTTCCTTTAACCATATTTCACATCTTAACCGCCATATTAAAACTAAGGTGTGTGTCTTACCGTTTAAGTGTAACCAATGCGAATTTAGCTTTAAAACGTCGGCTAAACTAGATCGTCACTTACGTATGCACAAAGGAGAACGTCCCTATAAATGCGCAATCTGTGATAAAGATTTTAATACAAGTGCACACCTGTCTCGACATATAAAAATCCATACACATGATAAATCCCATAAATGTGAGGTATGCGGAGCTGCTTTTCATCAGAGTCATAACCTCAAGACTCATATGCGCATTCACAATGGTGAGAAACCGTATAAGTGTGAAACTTGTGAAAGGTGTTTTGCACATAAACCAGATTTGAAGGTACATGCTAGAATACATACAGGAGAAAAACCTAACCAGTGCAAATTCTGTGATAAACGGTTCAACAGTACTCAGAGTTTAACACGTCATGTTCGTATACATACTGGCGAACGTCCGTATCGGTGCATAGCTTGTGCTAAGTCGTTCATCGATAACGGACATTTGATGAGGCATATGAAGGTTCATATTAAAGGAGTTAAGTTTATCAGCTAA
- Protein Sequence
- MSNEELQEIVKSQTDVLEHVPTVNPEPDPSPGYVLPPLLDLSVEDLIPTDEIKCERDEIDFFGGSEWDRLQANTIHTLNSVAINRPHLCIFCGNRFAYKNVLRIHVLGVHTLDDDKPVKCKICERGFPQQSYLTIHMRSHTGERPYKCELCDKTFAVRNVLKSHMRTHTGERPYKCYLCPKMYRQSSDLSKHIRTHVPDGKPYHCERCNSSFNHISHLNRHIKTKVCVLPFKCNQCEFSFKTSAKLDRHLRMHKGERPYKCAICDKDFNTSAHLSRHIKIHTHDKSHKCEVCGAAFHQSHNLKTHMRIHNGEKPYKCETCERCFAHKPDLKVHARIHTGEKPNQCKFCDKRFNSTQSLTRHVRIHTGERPYRCIACAKSFIDNGHLMRHMKVHIKGVKFIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -