Basic Information

Insect: Platerodrilus igneus
Gene Symbol: -
Assembly: GCA_036346225.1
Location: JARFIW010000929.1:2144664-2172579[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00059 0.32 14.9 0.5 1 23 118 140 118 140 0.99

2 12 0.00031 0.17 15.7 0.4 1 23 146 168 146 168 0.97

3 12 6.5e-05 0.035 17.9 3.0 1 23 174 196 174 196 0.98

4 12 0.00015 0.084 16.7 1.4 3 23 210 230 208 230 0.95

5 12 9.8e-05 0.053 17.3 0.7 2 23 237 258 236 258 0.97

6 12 3.9e-07 0.00021 24.9 3.3 1 23 264 286 264 286 0.99

7 12 2.7e-06 0.0015 22.2 0.5 1 23 292 314 292 314 0.99

8 12 2.6e-06 0.0014 22.3 0.1 1 23 320 342 320 342 0.98

9 12 1.5e-07 8e-05 26.2 1.7 1 23 348 370 348 370 0.98

10 12 4.3e-06 0.0024 21.6 5.4 1 23 376 398 376 398 0.98

11 12 2.1e-07 0.00011 25.7 1.5 1 23 404 426 404 426 0.97

12 12 1.6e-05 0.0087 19.8 3.6 2 23 433 455 432 455 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00059	0.32	14.9	0.5	1	23	118	140	118	140	0.99
2	12	0.00031	0.17	15.7	0.4	1	23	146	168	146	168	0.97
3	12	6.5e-05	0.035	17.9	3.0	1	23	174	196	174	196	0.98
4	12	0.00015	0.084	16.7	1.4	3	23	210	230	208	230	0.95
5	12	9.8e-05	0.053	17.3	0.7	2	23	237	258	236	258	0.97
6	12	3.9e-07	0.00021	24.9	3.3	1	23	264	286	264	286	0.99
7	12	2.7e-06	0.0015	22.2	0.5	1	23	292	314	292	314	0.99
8	12	2.6e-06	0.0014	22.3	0.1	1	23	320	342	320	342	0.98
9	12	1.5e-07	8e-05	26.2	1.7	1	23	348	370	348	370	0.98
10	12	4.3e-06	0.0024	21.6	5.4	1	23	376	398	376	398	0.98
11	12	2.1e-07	0.00011	25.7	1.5	1	23	404	426	404	426	0.97
12	12	1.6e-05	0.0087	19.8	3.6	2	23	433	455	432	455	0.95

Sequence Information

Coding Sequence: ATGTGTGTCCAATGTGTACTTCAGTGCAGCCGAGCTTATACCTTTAAGCAGCTCTGTGAACGATCCGACAATATATTAAGACAGTATATTAGTCCAGAATTTCAAGATCAATTAAGAACATTACATGACGAACAAATAAAGGATGATCCTAACGAAATTCAATTTGTTGATGCAGCTCTTGTTGGTAATGAACTTCCAGCAGAACTTGTCAACTTTAGTGTTGCTGAAGATGGTACTTATAAAATTGAGGTTAGCAGTGACATTTATACTATGAATATTGCAACAGATGCAGATGAACTGGATGTAAAGGATAATTGTTCAGATGATGAAGAAAGGCCTTCAAAATCAAAGTATACTTGTTCACGATGTGATGAatcatttttacttaaagttgacTTAAAGGTTCATATGATGAGTCATCCTAAAGAATTAAGTCATGTATGTGAGATTTGTAACAAAGCATTTGCTGAAGCTCGAATACTTAAAAGACATCTTAAAATTCACCTTGACAGAAAACCACATCAGTGTGATCAGTGTGAAATGTCGTTTGCTGAAAgttcaaatttaagtaaacataaaaaGAAACACACTGGTGAGTTACGCAACATTAAAGGAAAACCTCATTTATGTTCTGTCTGTGGACGAGCCTTTAAGTGGGCCTCTAGTTTATCAAAACATATGAAGTATCATACTGGAAATAAATTATTGACATGTAAATATTGTAATAAACAATATGTTGAGGCTAGAAGTTTAAAAATACATGTTCGTTCTCATACAGGCGAACGTCCATATCGTTGTACTACGTGTGATAAAAGTTTTACACAAGTCTGTAATCTAGAAAAACATATTCGAGTACATACTGGAGAAAAGCCATTTACCTGTACTACATGTGGGAAAGGgTTTACACAGTCAGGTTATGTGGGGATTCATATGCGCACCCACACTGGTGAAAGGCCATATATATGTACAACATGTGGAAAATCATTTGCTGGATCAAATACTTTAGCAGTGCACCAACGTATTCATACCGGAGAAAAACCATATGCTTGTACTATTTGTGGAAAATGTTTTAGTCGTCAGGAAACTTTGGTTGTTCATACCAGATCACACACAGGAGACAAACCGCATGTTTGCCATATTTGTAAAAAAGGGTTTACATCATCTGGACATCTGTCAGGTCacatgagaacacatactggtgaaaAACCTCATAGTTGTACAGTATGTGGGAAAAGATTTTCTGGTAGCAGTAGCTTAAAGGTACATATGCGAGGACATAATACTCTAAAACCATGTGAATGTAGATATTGTGGGAAGGAATTTGCAGATCATACCTCATTGCAAAATCATATCAATACATACCATAATATTACAAAGGGGAAATTAGTTAAACTTGAAGCATTACAGGTTCAAGAATTAATGTAA
Protein Sequence: MCVQCVLQCSRAYTFKQLCERSDNILRQYISPEFQDQLRTLHDEQIKDDPNEIQFVDAALVGNELPAELVNFSVAEDGTYKIEVSSDIYTMNIATDADELDVKDNCSDDEERPSKSKYTCSRCDESFLLKVDLKVHMMSHPKELSHVCEICNKAFAEARILKRHLKIHLDRKPHQCDQCEMSFAESSNLSKHKKKHTGELRNIKGKPHLCSVCGRAFKWASSLSKHMKYHTGNKLLTCKYCNKQYVEARSLKIHVRSHTGERPYRCTTCDKSFTQVCNLEKHIRVHTGEKPFTCTTCGKGFTQSGYVGIHMRTHTGERPYICTTCGKSFAGSNTLAVHQRIHTGEKPYACTICGKCFSRQETLVVHTRSHTGDKPHVCHICKKGFTSSGHLSGHMRTHTGEKPHSCTVCGKRFSGSSSLKVHMRGHNTLKPCECRYCGKEFADHTSLQNHINTYHNITKGKLVKLEALQVQELM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -