Pign106615.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Platerodrilus igneus
Gene Symbol
-
Assembly
GCA_036346225.1
Location
JARFIW010001118.1:1312443-1335329[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.35 1.9e+02 6.1 7.4 2 23 177 198 177 198 0.97
2 16 2.6e-06 0.0014 22.3 5.5 1 23 203 225 203 225 0.99
3 16 0.00015 0.084 16.7 5.0 1 23 231 253 231 253 0.97
4 16 7.7e-05 0.042 17.6 0.6 1 21 259 279 259 280 0.95
5 16 4.7e-06 0.0025 21.5 0.1 1 23 287 309 287 309 0.98
6 16 0.005 2.7 11.9 0.2 1 23 491 515 491 515 0.97
7 16 6.3e-06 0.0034 21.0 5.3 1 23 521 543 521 543 0.97
8 16 0.0034 1.9 12.4 4.6 1 23 549 571 549 571 0.97
9 16 0.00017 0.095 16.5 2.4 1 23 577 600 577 600 0.96
10 16 0.024 13 9.8 0.6 1 23 612 634 612 634 0.97
11 16 7.8e-06 0.0043 20.8 3.1 1 23 640 662 640 662 0.98
12 16 2.4e-06 0.0013 22.4 0.5 1 23 669 691 669 691 0.96
13 16 5e-06 0.0027 21.4 1.0 1 23 697 719 697 719 0.98
14 16 8.2e-07 0.00044 23.8 0.8 3 23 727 747 725 747 0.96
15 16 2.3e-05 0.012 19.3 0.1 1 23 753 775 753 775 0.99
16 16 2.7 1.5e+03 3.3 4.4 1 23 780 803 780 803 0.93

Sequence Information

Coding Sequence
ATGGAATTATCGGAATATGATTTTGAAACGATTTGTCGCGTATGTAAGCTGAAAGGTGATGGCATGCGATCAATTTTTGAGAATGATTGTCCCCGAATTGACGAGATGCTAATGGCCTGCACAACAGTTGTTGTTGATTTTGGAGATGGTTTACCTGAATGTGTTTGTATACAATGCACTGAGCAACTTTACAGTgcatataaatttaaacaactttGTGAAGCAACTGATGTATGTTTACGAAAGTATCTTCATTCGAAAGGGATTGTAACAAATGATGAATCTGTTAAACAGGAATTTAACCAAACTTTCGAGATCACACCAACAAATGcagtagaaaattttgaaaaaactgcCATTTGCTTGTTGCAGGGCGATGTTGAAGAAGATTTTACAGAAACTTCTCCTGATTGTGAATTAGAGGGTGCTGTTGAAGTGGAGATTAAAGGAGAATTTGAGGGTGATATACATGCTGTAACAAAGTCTAGTGATTATATCCAACTTCTAGAAAACAATCAGTTACTTGCAACTTGTAGGACTtgttcaaaatgttttactactttaGATGGCCTCAAATGCCATAAACGTATTCATAGTGGCagtctttttaaatgtaataaatgtgGAAAGCAATACACACGTCAAAATCACTTGCAGCGTCATGAACAAACACATGGACGACGTAAAGTTCATGTCTGCAAAATCTGTAGCAAAACTTTAACGAGATTCGAACATCTTAAGAGACACTTGATAACACATCTTAAAGAGAAACCTTTCAGTTGTACTACTTGTAATCGTGGTTTCAATAGAGCTGAGCATTTAGCTAACCATATAAATCGCTGCAAAGGTGATTTTGTTTACGTTTGTGGTATTTGTAATAAAGGTTTTAATCGTGCTGATAGCTTAGAGGTTCACAAACGTCTCCATGATAATAAAGAACCTCGACTGCCAACACTAGATAACTTAGATAACATTGATGAGCATTACTTTGAAATTGTGTACGATGGACCAGAAGATATGCCACCTCCATTTTCAGATGATTCAGAGAGTGATGTTGAACCTCTGCCTGATACAAATACAGATTGTTTTGTTCCTCAAGTAAATATTTCAGAAAGCACGGAACAGAATTTGAATGAGGCAAAGTTATGTCAAATTGTAGATGTTCCTAGTTTAGAATCAGTTTTGGGTACTAATGATACAATCTATGCAGAATTGGATCCTACTGAATTAAttgaagaaaaatttaaaattgcggAAGAAATGAAGTATTGCGATGACCAAGAGCAGTATGAATCTACTGCAAGTATTGAATCAGAATATTTACccaaaaaacaaattaaacgtaAACGCGGGCGCCCTCGAAAAAATTTTGGAATTAAACAAACGAAATTGTCAGTACGAATGCGGGGGCGCCctccaaaattcaaaaataaccAACATGATTTAccatatataaaaacagaaagcGAATTTACATGCCCTGAACCTGAATGTTctgaaatattcaataaaatgagttttcttgaaaaacatgttataaaacATAACAATATAAAACTACATACTTGTAAAACATGTAATAAATCTTTTGCTCGTGCTAATCACCTTAGGCGACATATGGTATCGCATTCGGAATTAAAACCGTTCTCTTGTGAATTTTGTATGAAGCGATTTAATAGAAGAGATCATTTAATACAACATACAAAGCTTCATATTAAAAGGGATGAATATGAGTGTGAAGTTTGTAAGAAAGTATTTGGTCGAATAAACCACCTAACTAAACACAAACTTTCTAAACATGATGTTGGTGAAAAGATGGATGGGGAAAAGAAGTACCAGTGTGGCGTGTGTCTTAAGAACTTTACTACAGAGAAGTACAGAGATATACACATTAAAGCACACATGGGAGATAAAACCTACACATGTCGTATTTGTGAAAAATCATTTGTTTCAAAATCACATTTAAGtgaacatataaaatttcatagtgAACATTCCAAAAAGTTTTTATGTTCAGAATGTGGTCAACGTTTTATTAGAAATGATTATCTCGTAATCCATATGCGAAGACATCGTGGAGAAAAGCCATTTAAATGTCAATATTGTGGAAAAGGTTTCCCACGCACTACCGATTTAACAGTTCATGAGCGATATCATACTGGGGAAAAAACTCATTTATGTACTGTATGTGGCAGGGGTTTTGGGCGAGCTTATAATTTAACTGTACATATGCGTACTCATACTGGGGAAAAACCTTATCAATGCACATATTGCGATGCAGCTTTTGCACAAGGAAATGATTTGAAAGCACATGTACGTCGACATACTGGAGAAAGATTTCATTGTGATTTCTGTAGTGAAAGCTTTCTAATGGGCTATTTACTAACACATCACAAACGAACTGTGCACGgccttaatattgttagtaatATAAGAAGGCTTAATCCTGTAAAACAACAACCTGAAGATGACGCTCCTGTAACAATTGCATTACCTATACCGGTTGTTCCTACATCTGTGTTTAATGCTCAGTTTCACAACGATTTCGTAGTGACACAATTACTTCAGGATGAAAAAAAAGATCAAATTTACAACTAG
Protein Sequence
MELSEYDFETICRVCKLKGDGMRSIFENDCPRIDEMLMACTTVVVDFGDGLPECVCIQCTEQLYSAYKFKQLCEATDVCLRKYLHSKGIVTNDESVKQEFNQTFEITPTNAVENFEKTAICLLQGDVEEDFTETSPDCELEGAVEVEIKGEFEGDIHAVTKSSDYIQLLENNQLLATCRTCSKCFTTLDGLKCHKRIHSGSLFKCNKCGKQYTRQNHLQRHEQTHGRRKVHVCKICSKTLTRFEHLKRHLITHLKEKPFSCTTCNRGFNRAEHLANHINRCKGDFVYVCGICNKGFNRADSLEVHKRLHDNKEPRLPTLDNLDNIDEHYFEIVYDGPEDMPPPFSDDSESDVEPLPDTNTDCFVPQVNISESTEQNLNEAKLCQIVDVPSLESVLGTNDTIYAELDPTELIEEKFKIAEEMKYCDDQEQYESTASIESEYLPKKQIKRKRGRPRKNFGIKQTKLSVRMRGRPPKFKNNQHDLPYIKTESEFTCPEPECSEIFNKMSFLEKHVIKHNNIKLHTCKTCNKSFARANHLRRHMVSHSELKPFSCEFCMKRFNRRDHLIQHTKLHIKRDEYECEVCKKVFGRINHLTKHKLSKHDVGEKMDGEKKYQCGVCLKNFTTEKYRDIHIKAHMGDKTYTCRICEKSFVSKSHLSEHIKFHSEHSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCQYCGKGFPRTTDLTVHERYHTGEKTHLCTVCGRGFGRAYNLTVHMRTHTGEKPYQCTYCDAAFAQGNDLKAHVRRHTGERFHCDFCSESFLMGYLLTHHKRTVHGLNIVSNIRRLNPVKQQPEDDAPVTIALPIPVVPTSVFNAQFHNDFVVTQLLQDEKKDQIYN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-