Pign102031.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Platerodrilus igneus
Gene Symbol
-
Assembly
GCA_036346225.1
Location
JARFIW010001103.1:1152907-1157061[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.021 11 10.0 2.8 1 23 659 681 659 681 0.96
2 18 0.00034 0.18 15.6 1.4 2 23 741 762 740 762 0.97
3 18 1.8e-05 0.0098 19.6 0.8 1 23 768 790 768 790 0.98
4 18 0.00029 0.16 15.8 0.4 1 23 796 818 796 818 0.98
5 18 4.9e-06 0.0027 21.4 1.5 1 23 824 846 824 846 0.99
6 18 0.00078 0.42 14.5 0.3 1 23 852 874 852 874 0.99
7 18 7.2e-06 0.0039 20.9 2.1 1 23 880 902 880 902 0.99
8 18 4.4e-05 0.024 18.4 3.7 1 23 908 930 908 930 0.99
9 18 0.0012 0.64 13.9 0.2 1 23 936 958 936 958 0.99
10 18 1e-05 0.0055 20.4 2.7 1 23 964 986 964 986 0.99
11 18 1.7e-05 0.0094 19.7 3.0 1 23 992 1014 992 1014 0.99
12 18 0.0012 0.63 13.9 0.4 1 23 1020 1042 1020 1042 0.98
13 18 0.0002 0.11 16.3 4.0 1 23 1048 1070 1048 1070 0.98
14 18 0.0021 1.2 13.1 0.5 1 23 1076 1098 1076 1098 0.98
15 18 0.0012 0.63 13.9 1.0 1 23 1104 1126 1104 1126 0.99
16 18 2.4e-05 0.013 19.2 0.2 1 23 1132 1154 1132 1154 0.99
17 18 7.4e-05 0.04 17.7 3.6 1 23 1160 1182 1160 1182 0.99
18 18 0.0039 2.1 12.3 3.2 1 23 1188 1210 1188 1210 0.97

Sequence Information

Coding Sequence
ATGGGCTCCATTTTTGTGGATCTTGCTCATCTAATCGAACAAAACAAGAAATCTTACCATTATCCTGAACCTGTTGAAATTAAACAAGAACCTGGATTAACAGAATCTCATACTTATACACgtttttttattaaacaagaGCCACTTGATACATCAACAAATGTTTCTGATGATGATGACACCTATCAAGATAGTTTTAGTGACGATTATTCGCTAGATAATTCTACTGATATTGAACAAGTACCTGTAGAGAACGAATCTCCATTTATACCACGTAACAATCATGTACAACCTAAagccattattaataatattattaagaaCGGTATGACAAAATGTGAGCCTCCTATACCAAAATCTGTTACAAACGTAACGAATGTTAAATCAGTATTGCCGCCTAGTGAAGTTTCTTGtaataaacaacaaaaatcaTTACCACATCCCTTACAGCAAAGTGCTTCACCACCAAATCATGTACCACATCAACCAATCGAAATTAACACAAAGGTTTCAAATGCTCATAACTCGCTTGATAAAATACAAAGtgatattaaagaaaaaatattgggAAACTGTGCCATCTCGCTTCAACaaattcctaaatttaaaaataacaatatatTAACCACGTGTTCAAAAATAGTCGAAAATAAGTTggaatctaaaaatacaaagtccAGCTGTGAATCTATTAATAATATCAGCAAAGTCATCGATCTGGAATCTCAAGAAATAAAAGTCGATACTAAAGTTGCTGAACCAGAGATTGAAAAGCCGCATACGGAGTCACAAACAAAAACGTTATCATCTGATAGATTACGGACAAGGCCGTTGACAAATATTAAACAAACAAGACCAGACACACCTACTGCAGTATCAACAAATAAAAAGGAAGAAACTAATATAACAGTATCTGGCAATGTTCAACCAGAAATTAAGGTGTTAGAGTCTAGTGACATTAAACCATTGGCTGAAATTGTTTCGTCCCATAACATTAATGCAGATATTAAAGGAACAACTTCTGATAGTATTAAACCGCAAAGTGAAACCGTTGTATCTAGTAACAGTGATTCGCaaatagaaataaaaacttttaataatactAAACCACAAAGTAAAACGCCTGCAttatgtaaaattaaaccaaaaattaagaaaaaatgttCTGATAGTAATAAACTACAGAACATAAGGATACTATCGGATAATATTAAACCACAAACTAAGCTGGAAACATCCAATACTGTTGAGTCACAAATCAAAATAGCAACCTCTTCTGATAATGTTAAACTGCAAGGTACAGTGGTAGCATGTGATGAGGTTAAACCACAAAGTAAAACGATAACATCTAATAATGGCCCCAATATACAAACGAAATCAGAAGTTTCAAAAGTAGTATACGCAATACTAACAGTTGTCAAGCCTGAAGGCGAATCTTCATTACTTAAACTCAATGTACAACAATCAAAAGCAGACACTTCAAAACCACTACCGACAGTCAATACGTTGCAAATTCAAACAACACCAGTTCaaaatcaagaaacatttttGCCTGTTGTAGTAAAATGCGAACCAGTATCAATAAACTCTAACGAAGCAGATAGTTTTGGAATTATACCATCAGAAGATGTACCTACCAAAGCTGTAGTGCCTGTTGAAACACAGCAAGTTGTAAAACATGCACCGTTTATTCCTTCGCCCCCTCCACTTGTACAATTTTCAGAACCTCAAAGGTTAGTTAAAATTGAACCTAAATTTAATACTTCTAAAAATGAACCACCCGCAGCTTACGAAGAGGATACAACAGCGAGTCTTGGTTAtaatattaatgtaaatgatATTCCTCCCTTAGTACCAATACAGTCTGATAACCCGACAAACTTTGACGATGGAATTACACATCTTGAATGTACTCCAAATATTGCCGATTATGTTGATGATGGTAATGAAGAACTTGAAGAAGATGATGCTCTTCACAAGTGTAACGATTGTGAATTTGAATGCAAAACTAAAGCAGAGTTTATAGTACACTTGAGTGCACATTTagaattgaaatttgaaattaaaccTGAGCCTGTGGCTAAAAAACGTGATTTATATGGACGTATCAAAACATTAGGTGGCAAACTTGTTTACGATTGCCAAGTTTGTAGTTACCGAACAGCTCTTAAGCGACGTTATTTGTTTCATACAAAGCTTCACGAAGAAAATAAGTTGTTAAAATGTACGCAGTGTAATTATTTGTGTGCAACGAAAAGTAACTTGAATGTACATATGGCAGTCCATACAGGACTTAAGCCACATAAGTGTACGGAATGTGGTTATAGTACTGTATCAAAATCAGCACTTATCGTTCATACACGTATACATACTGGTGATAGGCCTTATAGCTGTGGGGTTTGTGGTTATTGTACTATTTCAAAATCGGCTCTAATTGTGCATAACCGTATACATACAGGCAGTAAACCTTATCGTTGTCCATCATGCAATTACCGTACTATAACAAAATCATCCTTGACCGTTCACATGAGAACACACACTGGTGATAAACCTTTCCAATGTCAGTTATGTGAATATAGCACCAGAGCGAAATCAGCATTGAATGTTCATGTACGAATCCACGAAGGCTACAAACCATACCAATGTACTGAATGCGAATACCGTTGCTCGCAGCGTAGTGGGTTAAACGTGCATATGCGTGTACATACGGGCGATAAACCATTCCAATGCACTGAATGTGAATACAGATGTAGTAATAAAAGCAGCTTAGTTGTTCACTATCGTACACATACCGGAGAGACGCCTTATAAATGTGAAGAATGCGATTACACTACAGCTTGGAAATCTGCTCTAAATGTTCACACGAGAATTCATGGCGATAGAAAACCTTTTAGATGCACCGAATGCGATTATAAGTGTGCACAACGTAGCACTTTGAACGTACATATGCGCATCCACACCGGTGATAAACCATACCAATGCCTTGAATGCGATTATCGATGCCGCTACCAGGGTAACTTAAAAATGCACATGCGGGTACATACTCGAGAAACTCCATATAAATGCACTTTGTGTAATTACAGTACCACTGCGAAATCGGCATTAATTATTCATAATCGTATTCATACTGGTGAAAAACCATTTAAATGCACCGAGTGTTCTTATAAATGTAGTACAAAAAGCAGTTTGAAAATTCATGGTCGTGTTCATACTGGCGAAACACCCTACGAATGCAAACGTTGTTTATACAAAGCATCATCAAATTCTGCCCTTAAAGTACATTTACGAATTCATACTGGTGAGAAACCTTATAAATGTACATATTGCTCATATAGAGCAAGCAACAAAGGCAGCATAAAAGTTCATTTACGGGTTCATACAGGTGAAACGCCTTATGAGTGTAGCGTTTGTGACTATAAAACTACTGCTAAGTCTGCTCTCATAGTACATATGCGCACCCATACGGGTGACAAACCTTACAAATGTGAAGAATGCTCTTACAGATGCAATAACAAGAGTAGTTTAAAAGTACATCTAAAAGTGCATACAGGTCGAACGCCTTATCGATGTGAAATATGTGATTACAGGTGTAGGAAGAAATTTGTGCTGAAACGTCATTTAGGAGTACATAAAAAAGAAGAACGTGAAGAACCTGAAGAACCCGAGGAAGATGATTTGGGGGATATGATTGAAAACGAACCTAGCAGTCcggataatttaattacagtcAAAAATGAAATAGATGAATCAATGATGATTGACGAAGATGAAGGTACACTGCATGAACTTGACGAGATGATTATTGAACATGATAGAATGCTTAGTGAGCACAATACAATGATGAACAATGATTTCGGAATGATTAATGGATACCATGGTATGATTAACGAATTTGATGGGATGATTGATGAAAACACCGAAGTGGTTAATGCACATAACGGAATTAACGAATATGAAAGACTGGTCAATGGATATGATGGAATGGTTACTGAAAATGATGGATTAGTTAACGAGCACAATGGAGTGATTAACCAACACGATACAGTACTGAATGGTGAAGAAGAAGTAGAAGGCGAACATTTGGTCGACAGTGGTTATGATGCTGATCTGGATATATCGAATATTAAACCAGAATTTTCAGTTATAGCGGTGTAA
Protein Sequence
MGSIFVDLAHLIEQNKKSYHYPEPVEIKQEPGLTESHTYTRFFIKQEPLDTSTNVSDDDDTYQDSFSDDYSLDNSTDIEQVPVENESPFIPRNNHVQPKAIINNIIKNGMTKCEPPIPKSVTNVTNVKSVLPPSEVSCNKQQKSLPHPLQQSASPPNHVPHQPIEINTKVSNAHNSLDKIQSDIKEKILGNCAISLQQIPKFKNNNILTTCSKIVENKLESKNTKSSCESINNISKVIDLESQEIKVDTKVAEPEIEKPHTESQTKTLSSDRLRTRPLTNIKQTRPDTPTAVSTNKKEETNITVSGNVQPEIKVLESSDIKPLAEIVSSHNINADIKGTTSDSIKPQSETVVSSNSDSQIEIKTFNNTKPQSKTPALCKIKPKIKKKCSDSNKLQNIRILSDNIKPQTKLETSNTVESQIKIATSSDNVKLQGTVVACDEVKPQSKTITSNNGPNIQTKSEVSKVVYAILTVVKPEGESSLLKLNVQQSKADTSKPLPTVNTLQIQTTPVQNQETFLPVVVKCEPVSINSNEADSFGIIPSEDVPTKAVVPVETQQVVKHAPFIPSPPPLVQFSEPQRLVKIEPKFNTSKNEPPAAYEEDTTASLGYNINVNDIPPLVPIQSDNPTNFDDGITHLECTPNIADYVDDGNEELEEDDALHKCNDCEFECKTKAEFIVHLSAHLELKFEIKPEPVAKKRDLYGRIKTLGGKLVYDCQVCSYRTALKRRYLFHTKLHEENKLLKCTQCNYLCATKSNLNVHMAVHTGLKPHKCTECGYSTVSKSALIVHTRIHTGDRPYSCGVCGYCTISKSALIVHNRIHTGSKPYRCPSCNYRTITKSSLTVHMRTHTGDKPFQCQLCEYSTRAKSALNVHVRIHEGYKPYQCTECEYRCSQRSGLNVHMRVHTGDKPFQCTECEYRCSNKSSLVVHYRTHTGETPYKCEECDYTTAWKSALNVHTRIHGDRKPFRCTECDYKCAQRSTLNVHMRIHTGDKPYQCLECDYRCRYQGNLKMHMRVHTRETPYKCTLCNYSTTAKSALIIHNRIHTGEKPFKCTECSYKCSTKSSLKIHGRVHTGETPYECKRCLYKASSNSALKVHLRIHTGEKPYKCTYCSYRASNKGSIKVHLRVHTGETPYECSVCDYKTTAKSALIVHMRTHTGDKPYKCEECSYRCNNKSSLKVHLKVHTGRTPYRCEICDYRCRKKFVLKRHLGVHKKEEREEPEEPEEDDLGDMIENEPSSPDNLITVKNEIDESMMIDEDEGTLHELDEMIIEHDRMLSEHNTMMNNDFGMINGYHGMINEFDGMIDENTEVVNAHNGINEYERLVNGYDGMVTENDGLVNEHNGVINQHDTVLNGEEEVEGEHLVDSGYDADLDISNIKPEFSVIAV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-