Pign060233.1
Basic Information
- Insect
- Platerodrilus igneus
- Gene Symbol
- clz9
- Assembly
- GCA_036346225.1
- Location
- JARFIW010000772.1:1036485-1038411[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.7e-05 0.011 18.8 0.0 2 40 16 58 15 63 0.84 2 2 0.5 2e+02 5.2 0.0 2 25 70 97 69 106 0.83
Sequence Information
- Coding Sequence
- atgtCCAGAGGTCGCAAAAGAAAAAGTCAGAAAAGTTTGTTTTCAGAAGAACATATGCAAAGAGCTGGTCGACAAGTATTAATAGGGGAGCATGGCGTAAAACTATCTTTACGTAAAGCTGCAGACGAGAATGGTTTGTCTTTTCAGACGTTGCAGAGATATatgtCCAGAGGTCGCAAAAGAAAAAGTCAGAAAAGTTTGTTTTCAGAAGAACATATGCAAAGAGCTGGTCGACAAGTATTAATAGGGGAGCATGGCGTAAAACTATCTTTACGTAAAGCTGCAGACGAGAATGGATGCAGTCTTTCAAGAGCATCATCATTTAATGAGCATAATGTTAAATTATTCTTTGATAATCttaaaaaagcacataattgcTCCGAAGCATTCTCTGATGGCACTCGCATCTACAACCTTGACGAAACCGGCACGACGACCGTACAGAAACCCAAGAAAGTATTATCAGCAAAAggaattaaacaggttagtcaatGTACCAGTGGCGAACGTGGAGTATTAATTACTACTTGCTGCATAATAAGTGCCAGTGGAAATACTTTACCACCTGTCATGGTGTttccacaaaaaaattttaaaagccatATGTTAAATGGCCCCCCACCTGATACATTAGGTCTTGCAACTTCAACGGGCTGGATGAATGGGGAACTCTTTCCATCTGTAATGAAACACTTCATAAAATATAGTGGATCCTCTAAAGAAGCCCCTAGAATCTTAATATTTGATAATAATGATAGTCACCTTACCATAGAAACACTTAATATTGCTAAAGATAATGGAGTTACAATAATTACGCTACCTCCACACTGTAGCCATAAGCTACAACCATTACATACGTCAATATTTGCTCCGCTAAAGGCATATTATAATGCTGCAGTTGATTCCTGGCTTCTACATCATCCTGGGACACCGTTATCTATCTATGAAGTTGCTGGTTGTGTAGGTGTGGCATTCGAACGATCCATGACTCCATTAAATATAAACGCAGCTTTACCCATTGTCGATAAACAAACTGCGTCAACGACTATGGAAATTCCAAATGCCATTGCAGATCTTACTGAAGAAATGCCATCAACTTCTGTCGAAACACCACATTTTATATAA
- Protein Sequence
- MSRGRKRKSQKSLFSEEHMQRAGRQVLIGEHGVKLSLRKAADENGLSFQTLQRYMSRGRKRKSQKSLFSEEHMQRAGRQVLIGEHGVKLSLRKAADENGCSLSRASSFNEHNVKLFFDNLKKAHNCSEAFSDGTRIYNLDETGTTTVQKPKKVLSAKGIKQVSQCTSGERGVLITTCCIISASGNTLPPVMVFPQKNFKSHMLNGPPPDTLGLATSTGWMNGELFPSVMKHFIKYSGSSKEAPRILIFDNNDSHLTIETLNIAKDNGVTIITLPPHCSHKLQPLHTSIFAPLKAYYNAAVDSWLLHHPGTPLSIYEVAGCVGVAFERSMTPLNINAALPIVDKQTASTTMEIPNAIADLTEEMPSTSVETPHFI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -