Pign096888.1
Basic Information
- Insect
- Platerodrilus igneus
- Gene Symbol
- -
- Assembly
- GCA_036346225.1
- Location
- JARFIW010001081.1:5996925-5997716[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.2e-06 0.0013 21.8 0.0 2 40 25 64 24 66 0.94 2 2 5 2e+03 2.0 0.0 24 37 90 104 88 108 0.84
Sequence Information
- Coding Sequence
- ATGATTTTCAGATTGACAATACCGCGGAATTATAAGCATAAAATTGGCTCTCGAAGTTACAAAAACTACATTGATGAAAAACTTGAACAAGCTCTTAAAGAAATTAGAAGGAAAAGCATCACCTTGCGTGGAGCAGCAGAAAAGTATGGGATTCATAGGAACATCCTTTggctaaaactaaaacaaaaacacaaaaatgaaTATGGAAAACCAAAAGTTTTTagtatagaagaagaaaatgcatTTCCTGCCCATTTAATAGCTGTTTCTACATATGGCTTTCCATTCTCGACATTTGATCTAAGATGTGTGATTAAAAGCTATTTAGAAAGACAGGGTAGAAAAGTAAAATGCTTCAAACAAAACTTACCTGACTCTAATTGGgtcaaattatttctaaacacACACAAAAACCTTACCCAGAAAATAGCTCAAAATATAACTTATACGAGGGCGGCGACTGATGAAGAAATCATTAATGCTTTTTTTGAGCATTTACATAACGAATTAAACGGTATTCCTTCTTCCAATATCTGGCATTTTGACGAAACAAATTTAGTTGATAATCCAGGGCTAAAGAAAATAATTACTAAACGAGGTACAAAATATCCAGAAAGAATTAGAAATACCTTAAAAGCATTCACCTCAATAATGGTTTGTGGCAATGCTGATGGTACATTAGCACCACTTTATGTTAATTACAAATCTCATAAATTATGGAATACATGGACAGAAAAAGGCCCTCCTAATACAAGGTATAGTCGAACTAGTTCTGGATGGTTTGACTATTAA
- Protein Sequence
- MIFRLTIPRNYKHKIGSRSYKNYIDEKLEQALKEIRRKSITLRGAAEKYGIHRNILWLKLKQKHKNEYGKPKVFSIEEENAFPAHLIAVSTYGFPFSTFDLRCVIKSYLERQGRKVKCFKQNLPDSNWVKLFLNTHKNLTQKIAQNITYTRAATDEEIINAFFEHLHNELNGIPSSNIWHFDETNLVDNPGLKKIITKRGTKYPERIRNTLKAFTSIMVCGNADGTLAPLYVNYKSHKLWNTWTEKGPPNTRYSRTSSGWFDY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01210277;
- 90% Identity
- -
- 80% Identity
- -