Pign123246.1
Basic Information
- Insect
- Platerodrilus igneus
- Gene Symbol
- -
- Assembly
- GCA_036346225.1
- Location
- JARFIW010001211.1:2790702-2792659[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-08 4.5e-06 29.6 0.0 5 35 1 31 1 37 0.90
Sequence Information
- Coding Sequence
- ATGCGTCAGGCTGTTGAGGTGGTACTGGAGGGAAGAATGGGGTATCGCAAAGCTTCTAAAAAATATGGGGTTCCTTGTACAACCATTGAAAGAGGATTCAGCAAAAAAGGACTAGGACGTCATAAACCTGTTCTTAGTCCTGCTCAGGAAGAGGGATTAGtggaatatattttgtgtatgGAATCACGCCTGTTTGGTTTAACTCTCAATGCATTAAGGTGTTTGGCATTTGAATTAGCAGAACGCAACGGCTTGCCTAATAGATTTAATAAGAGCAAGAAAAAGGCTGGTAAAGCATGGCTGTATGCTTTTCTCAATCGGCATCCGACTATTAAACTTCGATCTCCTGAGCCAACCTCACTAGCTAGGGCAATAGGTTTTAATAGGCCTTCCGTAAACAAATTTTTCTTGCTGATTACGATGGAGAAACACAAAATACCCCCTGAGCGTATTTATAACGTCGATGAAACAGGGATTATGACAGTACCAAAAAAACGGTCTAAATGTTTATCATTGTGTGAAAAGCGACAAGTTGGCTGCTTGTCTTCGGCTGAACGTGGAGTTCTGGTTACAGTGGAGATCTGCATGAGTGCTAGTGGTGCATTCATGCCACCGTTGTTCGTTTTCCCAAGAGCTAGGGCAAAGCCAGAACTGTTAGATGATGCTCCCCCTGCCGCTAGCGTCCAAACCGCAGTTAGCGGATTTAGAAAAACGGGGATACATCCAGTAAATCCAGAGATCTTCCCAGACTGGATGTTTGAACCGGCCGAGACTACAAATAGGCCCACCCAAGGCGAAATAAATGATAACCAGTTACCAGAACCTAGAAACTCTCTACCTAGAACACCATTGAGAACACCACCTAGGACACCACCAAGGACACCACCAAGAAGTTTACCGAGATCACCACTGAGAAAACCACCAAGCACAACACCGATTCCTACAGAGCAGTTTTATGCAAATTCGACTCCTTTATGTTCCCATACCACGCAGAATTTTGTTATAACGCCACAACAGGTTGTTAGAGTTCCTCattgtgaacgaaaattaaatctaaatgatAGAAGAAGGGGTAAAACTGCAGTGTTAACATCGACACCATATAAAGAGGAACTAGAAGAATCAATTTCTAAAAGACATTCTACAAAGAAGCCAAAATTAAACTTAGGAGATACTGAAAAAACAGCCCATATagccaaactaaataaaaaaggcAAAATAAATGACAATGGGATGACGACTAGAAAAGACGTAACAGTAAAGAACGCAAATAAGAAAGACAGCAGCAGTGCAAAAGAAACGAGCGTGAGAGACAAAAAACAAAATGATACCAAgggtcaaaaaaatataaaaagaaggaAGTTGAGAGAAAGTAATGATTCAAGTTCAGAAGATGAATGCGAAGAAGCAGTTTGTATATTTTGCAGCGTACTTTATTCCAATTCTAAGGCAGAAGAAGGTTGGATATGGTGTCAACATAGCGAAGGCTGGGCCCATGATGCTTGTGCGGGAGTGGgggaagacgaagacgaagtttttacctgtgacttctgtcagtaa
- Protein Sequence
- MRQAVEVVLEGRMGYRKASKKYGVPCTTIERGFSKKGLGRHKPVLSPAQEEGLVEYILCMESRLFGLTLNALRCLAFELAERNGLPNRFNKSKKKAGKAWLYAFLNRHPTIKLRSPEPTSLARAIGFNRPSVNKFFLLITMEKHKIPPERIYNVDETGIMTVPKKRSKCLSLCEKRQVGCLSSAERGVLVTVEICMSASGAFMPPLFVFPRARAKPELLDDAPPAASVQTAVSGFRKTGIHPVNPEIFPDWMFEPAETTNRPTQGEINDNQLPEPRNSLPRTPLRTPPRTPPRTPPRSLPRSPLRKPPSTTPIPTEQFYANSTPLCSHTTQNFVITPQQVVRVPHCERKLNLNDRRRGKTAVLTSTPYKEELEESISKRHSTKKPKLNLGDTEKTAHIAKLNKKGKINDNGMTTRKDVTVKNANKKDSSSAKETSVRDKKQNDTKGQKNIKRRKLRESNDSSSEDECEEAVCIFCSVLYSNSKAEEGWIWCQHSEGWAHDACAGVGEDEDEVFTCDFCQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01210199;
- 90% Identity
- -
- 80% Identity
- -