Pign086178.1
Basic Information
- Insect
- Platerodrilus igneus
- Gene Symbol
- -
- Assembly
- GCA_036346225.1
- Location
- JARFIW010000986.1:638133-639266[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3e-10 1.2e-07 34.7 0.0 5 39 1 36 1 42 0.89
Sequence Information
- Coding Sequence
- ATGCGTCAGGCTGTTGAGGAGGTACTGGAGGGAAGAATGGGGTATCTCAAAGCTTCTAAAGAATATGGGGTTCCTCGTACAACCATTGAAGCAAGGGTGAAGAAAATTAAACAGGGTGTTCTTAACAGAGAGGATTTAGCAAAAAAAGGACTAAGACGTCATAAATCTGTTTTTAATCCTGCTCAGGAAGAGGAATTAGtggaatatattttgtgtatgGAATCACGCCTGTTTGGTTTAACTCTCAATGCATTAAGGTGTTTGGCATTTGAATTAGCAGAACGCAACGGCTTGCCTAATAGATTTAATAAGAGCAAGAAAAAGGCTGGTAAAGCATGGCTGTATGCTTTTCTCAATCGGCATCCGACTATTAAACTTCGATTTCCTGAGCCAACCTCACTAGCTAGGGCAATAGGTTTCAATAAGCCTTCCGTAAACAAATTTTTCTCGCTGATTACTGAAACGATGAAGAAACACAAAATACCCCCTGAGCGTATTTATAACGTCGATGAAACAGGGATTATGACAGTACCAAAAAAACGGTCTAAATGTTTATCATTGCTTGGAAAGCGACAAGTTGGCTGCTTGTCTTCGGCTGAACGTGGAGTTCTGGTTACAGTGGAGATCTGCATGAGTGCTAGTGGTGCATTCATGCCACCGTTGTTCGTTTTCCTAAGAGCTAGGGCAAAGCCAGAACTGTTAGATGATGCTCCCCCTGGTAGTACAGCTCATTACCATCTTTCAGGGTGGatgcaaacggaaatatttttgaGTTGGTTCGATAAATTTATTGCTTTTTCCAACCCTTCTAAAGAAAATCCAGTTCTTTTGCTTCTAGATGGCCATGCCACCCATACCAAGAATATACAGCTAATTCATAGAGCTAGGGATAACGGTGTTGTGTTACTGTGCTTTCCACCGCATACAACACACCGTCTACAACCAATAGACGTAAGTTTTATGTCACCAATCAGCTCATATTACAGTTCAGAGGTCCAGAGATGGATGCAACAACATCCAGGCAGGCCTATTACTATTTCTCAAATAGGCAAACTTTTTGGAAATGCTTTTATGAAATCCGCTAGCGTCCAAACCGCAGTTAGCGGATTTAGAAAACGGGGATACATCCAGTAA
- Protein Sequence
- MRQAVEEVLEGRMGYLKASKEYGVPRTTIEARVKKIKQGVLNREDLAKKGLRRHKSVFNPAQEEELVEYILCMESRLFGLTLNALRCLAFELAERNGLPNRFNKSKKKAGKAWLYAFLNRHPTIKLRFPEPTSLARAIGFNKPSVNKFFSLITETMKKHKIPPERIYNVDETGIMTVPKKRSKCLSLLGKRQVGCLSSAERGVLVTVEICMSASGAFMPPLFVFLRARAKPELLDDAPPGSTAHYHLSGWMQTEIFLSWFDKFIAFSNPSKENPVLLLLDGHATHTKNIQLIHRARDNGVVLLCFPPHTTHRLQPIDVSFMSPISSYYSSEVQRWMQQHPGRPITISQIGKLFGNAFMKSASVQTAVSGFRKRGYIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01210256; iTF_01105650; iTF_01105568; iTF_00755430; iTF_00002156; iTF_00002386; iTF_01210322; iTF_01210230; iTF_01210238;
- 90% Identity
- iTF_01210256;
- 80% Identity
- -