Basic Information

Gene Symbol
-
Assembly
GCA_036346225.1
Location
JARFIW010001186.1:702957-704788[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2.1e-10 8.2e-08 35.2 0.0 4 42 21 58 19 61 0.92

Sequence Information

Coding Sequence
ATGCCAAGAACCTATAAACCTAACCTGAGAGGGAAACATCAAGTTCCGCACATTGCTGCTGAAATCGAGAAGGCTCTAAACACTGTATCTAGAGGTCTGTCTTTAAGGAAAACTGCAATGAAATATGGCATTCCCAAGTCGGTATTACATCGACATAAAAGATGTTCTGAAATGCAAAAGAAACCGTTAAAGGTCGGTGGCCAGCCTGTTCTTTCTGCTCAAGTTGAAGAACATTTAGCGAAATACCTAATCACCTGTTCTGAGTGGGGTTATCTCTTAGATGGTTATGATTTAAGGTGTATAGTTAAGAGTTATCTAGAGTCTAAAGGTCAAAATGTGTCAAAATTTAAGAACAATTTCCCTGGGAAAgattttgtatatagttttttaaacCGTTATAAAGGTGCCTTGACTGAAAGAATGTGTCAAAATGTTGAACGGGCAAGAGCAGGAGTTAACCAGGAAACAATAAACTCTTATTTCACTAAGATTGCAGAAACGTTGAAAGATGTACCTCtatcaaatattatcaattatgatGAGACCTGTTTAAGCGATGACCCAGGACGTAAAAACATTATTGCCAAACGTGGTGTAAAATACCCTGATCGTGTAATCAACAGCACAAAAACATCAACGTCTTTGATATATGCTGCTGCAAGTGAAGGTGTGCTTCTCCCAGAATATATAGTGTACAAAGCACTACATTTGTATGATAGCTGGACAATTGGTGAACCCAGTAATGCCGGATACAACAAAAGTGCGACGGGTTGGTTTGATTCTGTTTGCTTTCAAGATTGGGTAAAAACCATTGTTATACCATATGCATCAAAATTACCTGGACGAAAAATCCTTTTAGGAGACAATTTGTCCTCCCACTTGTCAATCAGTGCTATTGAGATGTGTGAAGAAAATAACATAGAGTTTGTGTTTTTACAAAGTAATTCTACGCATTTAACACAGCCACTTGATGTGACTTTTTTTTCGCCTTTGAAGAATGCATGGcgacaaattttgttaaaatggaAGAAGGGTCGTGGTAGGAAGCAACCGACTATCGCAAAAGATTCATTTCCTCAGCTTCTTATGCAGCTAAATCAAAAAATTCGCGAAATTGCTAAGGAAAACATTATAGCTGTATTTAGAAAATGTGGAATAGTTCCACTTAATTCACAAAAAGTGTTGGACCGGCTCCCTACTGAGCATGCAAGTGAGAATGACACTGGTTTGGTAGATGATTCAATAGTGACATTATTAAAGGAAATGAGGTATGAAGGTTCTAAACCACGAGTTCCTAAAAAACGAATTAATGTTGAACCTAGTAAGAGTGTCCAACGTTTTGATCTTTGTTCTGAAGACAGCTCAATGACATTGGACAACAATCAACGAGAATCAtcagaaaatgaaataaatttttctgATTCAGAATCTGTTGCAGAACAAAAAGTGCTAAGGATTCTCACTGTAGGGGCAGTTTTGGAAGAAAATGACTGGATTGTGGTGGACTTCAGTCAAAGTCGTGCAACTGCTTCCAAAAAAGCGAATCAAAATTGGTTTATGGGAATGATAACCAATACACTGGAAGGAAATCAAATCAAAGAATATGATGCTTCCTTTGTGAGATATGTGGAAACAAAAATCAATCATGGATCAACATTCAAGTGGCCAGATACGAAAGACCAATGTTTTTTTGATAAAAAGTGGATTGTAGGACGTCTACTTCATCCACAACTACTTCGACGTGGACTCATAAAGTTTAATGTTAATGTAGATGAGTGGCACTAA
Protein Sequence
MPRTYKPNLRGKHQVPHIAAEIEKALNTVSRGLSLRKTAMKYGIPKSVLHRHKRCSEMQKKPLKVGGQPVLSAQVEEHLAKYLITCSEWGYLLDGYDLRCIVKSYLESKGQNVSKFKNNFPGKDFVYSFLNRYKGALTERMCQNVERARAGVNQETINSYFTKIAETLKDVPLSNIINYDETCLSDDPGRKNIIAKRGVKYPDRVINSTKTSTSLIYAAASEGVLLPEYIVYKALHLYDSWTIGEPSNAGYNKSATGWFDSVCFQDWVKTIVIPYASKLPGRKILLGDNLSSHLSISAIEMCEENNIEFVFLQSNSTHLTQPLDVTFFSPLKNAWRQILLKWKKGRGRKQPTIAKDSFPQLLMQLNQKIREIAKENIIAVFRKCGIVPLNSQKVLDRLPTEHASENDTGLVDDSIVTLLKEMRYEGSKPRVPKKRINVEPSKSVQRFDLCSEDSSMTLDNNQRESSENEINFSDSESVAEQKVLRILTVGAVLEENDWIVVDFSQSRATASKKANQNWFMGMITNTLEGNQIKEYDASFVRYVETKINHGSTFKWPDTKDQCFFDKKWIVGRLLHPQLLRRGLIKFNVNVDEWH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01210247;
90% Identity
-
80% Identity
-